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[185951_at]

Description C23F12.3 /REP_DB=WormBase Gene ID /WP=CE04047 /TR=Q18108 /GB=AAB37031.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 7.2
(0.8)
A 		9.8
(3)
A 		4
(-2)
A 		2.8
(-3)
A 		7
B 2.4
(-3)
A 		6.1
(3)
A 		3.5
(-1.2)
A 		5
(1.2)
A 		4
C 2.2
(-3)
A 		7.4
(-2.2)
A 		2.3
(-3)
A 		40.7
(3)
A 		39
avr 3.9
(-2.7) 		7.8
(-0.9) 		3.3
(-3) 		16.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.2
(2.5)
A 		3.1
(-1.8)
A 		4.8
(0.5)
A 		2.7
(-2.3)
A 		2.2
(-3)
A 		6.6
(3)
A 		4
B 6.1
(3)
A 		2.2
(-2.3)
A 		1.7
(-3)
A 		1.9
(-2.7)
A 		4.7
(1.1)
A 		2.8
(-1.5)
A 		4
C 2
(-3)
A 		5.4
(1.6)
A 		3
(-1.6)
A 		6.4
(3)
A 		3.6
(-0.8)
A 		2.8
(-1.9)
A 		4
avr 4.8
(3) 		3.6
(-1.5) 		3.2
(-3) 		3.7
(-1.1) 		3.5
(-1.9) 		4.1
(0.4) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.6
(3)
A 		2.1
(1.6)
A 		1.1
(-1.1)
A 		0.4
(-3)
A 		2
B 0.8
(-3)
A 		1.5
(3)
A 		0.8
(-3)
A 		1.1
(-0.4)
A 		1
C 0.7
(-3)
A 		2.1
(-1.6)
A 		0.8
(-2.9)
A 		6.9
(3)
A 		6
avr 1.4
(-1.4) 		1.9
(0.2) 		0.9
(-3) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(-0.3)
A 		1.1
(-0.3)
A 		1
(-1)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1.6
(3)
A 		1
B 2.1
(3)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		0.5
(-2.6)
A 		1.9
(2.3)
A 		1
(-0.9)
A 		2
C 0.7
(-3)
A 		1.7
(3)
A 		0.8
(-2.4)
A 		1.3
(0.6)
A 		1.2
(0)
A 		0.9
(-1.8)
A 		1
avr 1.3
(3) 		1.2
(2) 		0.7
(-3) 		0.8
(-2) 		1.3
(3) 		1.2
(2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16374
Sequence Type Exemplar sequence
Representative Public ID C23F12.3 NCBI
Target Description C23F12.3 /REP_DB=WormBase Gene ID /WP=CE04047 /TR=Q18108 /GB=AAB37031.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077177(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077177 NCBI Caenorhabditis elegans C23F12.3 (C23F12.3) mRNA, complete cds. 11/11 None
SNAP00000036456 ENSEMBL cdna:SNAP chromosome:CEL140:X:9391590:9393170:1 9/11 None
GENEFINDER00000036466 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9391590:9394632:1 10/11 None
C23F12.3 ENSEMBL cdna:known chromosome:CEL140:X:9392062:9394632:1 gene:C23F12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9392061-9394632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C23F12.3
Entrez Gene 182811 Entrez gene
SwissProt Q18108 EMBL-EBI
WormBase CE04047 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37031 Hypothetical protein C23F12.3 [Caenorhabditis elegans] ref|NP_509578.1| C23F12.3 [Caenorhabditis elegans] 6.0E-70
blast AAB37031 Hypothetical protein C23F12.3 [Caenorhabditis elegans] ref|NP_509578.1| C23F12.3 [Caenorhabditis elegans] 5.0E-68
blast AAB37031 Hypothetical protein C23F12.3 [Caenorhabditis elegans] ref|NP_509578.1| C23F12.3 [Caenorhabditis elegans] 2.0E-50
Sequence
Target Sequence 
>C. ELEGANS:185951_AT
atgttacagcaggaatcgttcgccccatcttttcctgcttcaaaatcagcggtcaacgga
caagcatcgatggccgaaaataatagacaaaccaggtgtgccaaccagcttccaccgcct
gctccagttccagactttattaaagtttgggtgaagcagcaaaaagaaaaagagttggct
ctcaataaaaacaacggatcgggtcaggcaagcagcagtttgtcaaatcgtcgtgacaag
tcggtggaatttgttgccgaagtcaagcccgatagtgggtacgcacttgttaagaccccc
acgaaaagagacggaatgtcaagaactaccgcggattatacgtcacactcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTACAGCAGGAATCGTTCGCCC 635 47 13 Antisense
TCAGCGGTCAACGGACAAGCATCGA 340 625 58 Antisense
GACAAACCAGGTGTGCCAACCAGCT 463 365 98 Antisense
CTGCTCCAGTTCCAGACTTTATTAA 304 237 131 Antisense
GATCGGGTCAGGCAAGCAGCAGTTT 144 417 209 Antisense
GCAGCAGTTTGTCAAATCGTCGTGA 503 313 224 Antisense
ATTTGTTGCCGAAGTCAAGCCCGAT 574 17 261 Antisense
AGCCCGATAGTGGGTACGCACTTGT 64 83 278 Antisense
GACCCCCACGAAAAGAGACGGAATG 561 377 306 Antisense
GGAATGTCAAGAACTACCGCGGATT 50 533 325 Antisense
CGCGGATTATACGTCACACTCAACA 211 255 342 Antisense
Sequence Source Affymetrix Proprietary Database