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[185950_at]

Description T10B11.4 /REP_DB=WormBase Gene ID /WP=CE18243 /TR=Q9TZI0 /GB=AAC67464.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 102.7
(0.2)
A 		76
(-3)
M 		96.1
(-0.6)
A 		126.7
(3)
A 		51
B 83.1
(-1.3)
A 		77.2
(-3)
A 		97.6
(3)
A 		84.6
(-0.8)
P 		20
C 41.2
(-3)
A 		49.4
(-2.4)
A 		65.5
(-1.2)
A 		123
(3)
P 		82
avr 75.7
(-1.9) 		67.5
(-3) 		86.4
(-0.4) 		111.4
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 74.5
(3)
A 		53.7
(-2.5)
A 		70.1
(1.8)
A 		58.8
(-1.1)
A 		64
(0.2)
A 		51.7
(-3)
A 		23
B 100.8
(3)
A 		83.1
(0.2)
A 		91.5
(1.5)
A 		85.4
(0.5)
A 		63.9
(-2.9)
A 		63.3
(-3)
A 		38
C 79
(1.7)
A 		83.7
(2.9)
P 		84.2
(3)
A 		60.7
(-3)
A 		63.6
(-2.3)
A 		64.5
(-2)
A 		24
avr 84.8
(3) 		73.5
(0.3) 		81.9
(2.3) 		68.3
(-1) 		63.8
(-2) 		59.8
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 37.4
(3)
A 		16.5
(-3)
M 		25.1
(-0.5)
A 		18.5
(-2.4)
A 		21
B 26.5
(3)
A 		19.1
(-2.2)
A 		22.6
(0.2)
A 		18
(-3)
P 		9
C 13.6
(-3)
A 		14.2
(-2.6)
A 		22.8
(3)
A 		20.7
(1.6)
P 		9
avr 25.8
(3) 		16.6
(-3) 		23.5
(1.5) 		19.1
(-1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13.7
(-2)
A 		19.1
(2.8)
A 		15.3
(-0.6)
A 		14.9
(-0.9)
A 		19.3
(3)
A 		12.6
(-3)
A 		7
B 35.1
(3)
A 		27.7
(-0.4)
A 		22.2
(-3)
A 		22.6
(-2.8)
A 		26
(-1.2)
A 		23.6
(-2.3)
A 		13
C 29.3
(3)
A 		25.5
(1.7)
P 		21.4
(0.2)
A 		12.2
(-3)
A 		20.6
(-0.1)
A 		21.6
(0.3)
A 		17
avr 26
(3) 		24.1
(1.8) 		19.6
(-1.1) 		16.6
(-3) 		22
(0.4) 		19.3
(-1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1985
Sequence Type Exemplar sequence
Representative Public ID T10B11.4 NCBI
Target Description T10B11.4 /REP_DB=WormBase Gene ID /WP=CE18243 /TR=Q9TZI0 /GB=AAC67464.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059577 NCBI Caenorhabditis elegans T10B11.4 (T10B11.4) mRNA, complete cds. 11/11 None
SNAP00000021310 ENSEMBL cdna:SNAP chromosome:CEL140:I:6945195:6947750:-1 11/11 None
GENEFINDER00000021322 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6945195:6950082:-1 11/11 None
T10B11.4 ENSEMBL cdna:known chromosome:CEL140:I:6945195:6947914:-1 gene:T10B11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001465 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6945125-6947845(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B11.4
Entrez Gene 188369 Entrez gene
SwissProt Q9TZI0 EMBL-EBI
WormBase CE18243 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491978 T10B11.4 [Caenorhabditis elegans] gb|AAC67464.1| Hypothetical protein T10B11.4 [Caenorhabditis elegans] 0.0
blast NP_491979 T10B11.5 [Caenorhabditis elegans] gb|AAC67467.1| Hypothetical protein T10B11.5 [Caenorhabditis elegans] 1.0E-145
blast CAE60335 Hypothetical protein CBG03927 [Caenorhabditis briggsae] 1.0E-113
blast CAA84663 Hypothetical protein F37A8.2 [Caenorhabditis elegans] ref|NP_497794.1| F37A8.2 [Caenorhabditis elegans] 1.0E-68
blast CAE74568 Hypothetical protein CBG22332 [Caenorhabditis briggsae] 2.0E-68
blast CAA84663 Hypothetical protein F37A8.2 [Caenorhabditis elegans] ref|NP_497794.1| F37A8.2 [Caenorhabditis elegans] 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR008547 EMBL-EBI Eukaryotic protein of unknown function DUF829 4.6E-101
Sequence
Target Sequence 
>C. ELEGANS:185950_AT
cagctctcgacaatgcttctcgaaaggatcaactagcaaggaaatcaagaaaaacttcga
aaagggcatctgtcgtaagcaaagatcaagagctcgagacatgaaagagagaggtattga
tgtgaaaagtgcgtcggcagtgagctcctattcgggaatgagttcgaaaagctcatccac
tgaaacggactgctctgtgatatcggttacactttccgtcgtgtctacaattcctgattt
cgccactgcaatcccgattgaagcccatccaaaagttaaaacaatgctcgttgtcgttga
accaactgaagattacggaatcggccaaacccacgtggaattggagatgaatccatccgt
caagcttatggatgccatttgggaattactttatcgaaaacggaagatatttgacgatta
cgttccctacagcagtctttactttgcagccattaagagtagtgaaaaagtgggaatgcg
tcgaattgagaaaaagttttggtcaagctggttgcttatggatgttccgaaactctatag
aagatctaaagatcgtatgctaaaagatcagaatccgcttgtggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCTCTCGACAATGCTTCTCGAAA 448 203 474 Antisense
GGCAGTGAGCTCCTATTCGGGAATG 669 533 609 Antisense
GCTCATCCACTGAAACGGACTGCTC 452 301 644 Antisense
CGGACTGCTCTGTGATATCGGTTAC 636 239 659 Antisense
CACTTTCCGTCGTGTCTACAATTCC 283 197 683 Antisense
GCCACTGCAATCCCGATTGAAGCCC 131 279 715 Antisense
AATCGGCCAAACCCACGTGGAATTG 234 145 792 Antisense
GATGAATCCATCCGTCAAGCTTATG 514 411 819 Antisense
TTTGACGATTACGTTCCCTACAGCA 450 665 883 Antisense
ACAGCAGTCTTTACTTTGCAGCCAT 428 109 902 Antisense
AAAGATCAGAATCCGCTTGTGGCCG 400 123 1036 Antisense
Sequence Source Affymetrix Proprietary Database