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[185949_at]

Description C42D4.13 /REP_DB=WormBase Gene ID /WP=CE04201 /TR=Q18576 /GB=AAA83351.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 16.5
(-3)
A 		223.3
(1.5)
P 		293
(3)
P 		76.9
(-1.7)
A 		277
B 23.1
(-3)
A 		264
(3)
P 		164.2
(0.5)
P 		51
(-2.3)
A 		241
C 58.2
(-3)
A 		303.8
(3)
P 		143.2
(-0.9)
P 		103.6
(-1.9)
A 		246
avr 32.6
(-3) 		263.7
(3) 		200.1
(1.3) 		77.2
(-1.8) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 995
1 2 3 4 5 6 range
A 55.1
(-3)
A 		283.4
(-1.5)
P 		125.2
(-2.6)
P 		992.1
(3)
P 		950.7
(2.7)
P 		234.5
(-1.9)
P 		937
B 50.1
(-3)
A 		271
(-1.6)
P 		150.8
(-2.4)
P 		1011.7
(3)
P 		844.2
(2)
P 		224.9
(-1.9)
P 		962
C 17
(-3)
A 		199.2
(-1.6)
P 		166.8
(-1.8)
P 		789.2
(3)
P 		777.9
(2.9)
P 		155.7
(-1.9)
P 		772
avr 40.7
(-3) 		251.2
(-1.6) 		147.6
(-2.3) 		931
(3) 		857.6
(2.5) 		205
(-1.9) 		890
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 6
(-3)
A 		48.5
(0.6)
P 		76.6
(3)
P 		11.3
(-2.5)
A 		71
B 7.4
(-3)
A 		65.2
(3)
P 		38.1
(0.2)
P 		10.9
(-2.6)
A 		58
C 19.3
(-2.8)
A 		87.4
(3)
P 		49.9
(-0.2)
P 		17.5
(-3)
A 		70
avr 10.9
(-3) 		67
(3) 		54.9
(1.7) 		13.2
(-2.8) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 10.2
(-3)
A 		100.8
(-1)
P 		27.3
(-2.6)
P 		251.6
(2.2)
P 		286.9
(3)
P 		57.1
(-2)
P 		277
B 17.4
(-3)
A 		90.2
(-1.7)
P 		36.6
(-2.6)
P 		268
(1.6)
P 		343
(3)
P 		83.8
(-1.8)
P 		326
C 6.3
(-3)
A 		60.8
(-1.7)
P 		42.5
(-2.1)
P 		158.7
(0.7)
P 		251.7
(3)
P 		52.1
(-1.9)
P 		245
avr 11.3
(-3) 		83.9
(-1.5) 		35.5
(-2.5) 		226.1
(1.6) 		293.9
(3) 		64.3
(-1.9) 		283
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8787
Sequence Type Exemplar sequence
Representative Public ID C42D4.13 NCBI
Target Description C42D4.13 /REP_DB=WormBase Gene ID /WP=CE04201 /TR=Q18576 /GB=AAA83351.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068734 NCBI Caenorhabditis elegans C42D4.13 (C42D4.13) mRNA, complete cds. 11/11 None
C42D4.13 ENSEMBL cdna:known chromosome:CEL140:IV:7187364:7188094:-1 gene:C42D4.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029587 6/11 Cross Hyb Matching Probes None
GENEFINDER00000029595 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7187392-7188100(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C42D4.13
Entrez Gene 183405 Entrez gene
SwissProt Q18576 EMBL-EBI
WormBase CE34746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501135 C42D4.13 [Caenorhabditis elegans] gb|AAA83351.2| Hypothetical protein C42D4.13 [Caenorhabditis elegans] 1.0E-115
blast CAE61831 Hypothetical protein CBG05801 [Caenorhabditis briggsae] 1.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501135.2 1 7-29
C42D4.13 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185949_AT
acaatcgcggcgattccttttttcttccatccattctctataatcaccatgaaatatttg
tctattttatcaatcttcacactttcaatgttccatatccactgccaacaacccttgcca
ctatcccaatctcctagttattatggagaatttcaaggagcaaatcttggatatcctcca
attcccaatctacttccacaatttcaagcgatgaattttattggagcaactacagaaccg
agacgtacaattccaaaacaagcagatggaaccgattgtccaatgcctcctgaatgtggt
tgtctttgtggaagaagtggaaggaagaagagagagactggagaattttggaagaatacc
gaggaacctgaatctgagattagatgcacatctggaaagttgagaagagttgtcgagaag
gcaatctccaaggcgaccaaagaaggaattcaattcgatcttggtgtgaactctctcacc
aattatgtactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATCGCGGCGATTCCTTTTTTCT 196 115 16 Antisense
TCTTCCATCCATTCTCTATAATCAC 191 619 38 Antisense
ATTTTATCAATCTTCACACTTTCAA 372 15 79 Antisense
TTCAATGTTCCATATCCACTGCCAA 417 685 99 Antisense
CCACTATCCCAATCTCCTAGTTATT 440 275 133 Antisense
TTGGATATCCTCCAATTCCCAATCT 471 707 182 Antisense
TCCCAATCTACTTCCACAATTTCAA 406 599 198 Antisense
ATGGAACCGATTGTCCAATGCCTCC 229 53 281 Antisense
AATGCCTCCTGAATGTGGTTGTCTT 459 167 297 Antisense
ATTCGATCTTGGTGTGAACTCTCTC 383 9 468 Antisense
GAACTCTCTCACCAATTATGTACTT 377 349 483 Antisense
Sequence Source Affymetrix Proprietary Database