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[185948_at]

Description F45F2.11 /REP_DB=WormBase Gene ID /WP=CE10536 /TR=Q22975 /GB=AAC48032.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 77      4grp_high_8_8 > 14      6grp_total > 77      4grp_total > 09      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 46.6
(-3)
A 		67.2
(-2.3)
P 		94.2
(-1.5)
P 		236
(3)
P 		189
B 24.3
(-3)
A 		47.7
(-2.4)
A 		68.2
(-1.9)
M 		268.1
(3)
P 		244
C 46.5
(-3)
P 		80.6
(-2.1)
P 		47.3
(-3)
P 		286.7
(3)
P 		240
avr 39.1
(-3) 		65.2
(-2.3) 		69.9
(-2.2) 		263.6
(3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 84.7
(-2.8)
P 		77.4
(-3)
P 		89.3
(-2.6)
P 		79
(-2.9)
P 		142.7
(-1)
P 		269.3
(3)
P 		192
B 45.2
(-3)
A 		63.5
(-2.4)
P 		82.6
(-1.7)
P 		81.5
(-1.7)
P 		94.4
(-1.3)
P 		218.9
(3)
P 		174
C 16.8
(-3)
A 		90.1
(-0.4)
P 		61.7
(-1.4)
P 		71.4
(-1.1)
P 		135.6
(1.2)
P 		187.7
(3)
P 		171
avr 48.9
(-3) 		77
(-2) 		77.9
(-2) 		77.3
(-2) 		124.2
(-0.4) 		225.3
(3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 17
(-2.3)
A 		14.6
(-3)
P 		24.6
(0)
P 		34.6
(3)
P 		20
B 7.8
(-3)
A 		11.8
(-2.5)
A 		15.8
(-2)
M 		57.1
(3)
P 		49
C 15.4
(-3)
P 		23.2
(-1.6)
P 		16.5
(-2.8)
P 		48.3
(3)
P 		33
avr 13.4
(-3) 		16.5
(-2.4) 		19
(-2) 		46.7
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 15.6
(-3)
P 		27.5
(-1.6)
P 		19.4
(-2.5)
P 		20
(-2.5)
P 		43.1
(0.3)
P 		65.6
(3)
P 		50
B 15.7
(-3)
A 		21.1
(-2.5)
P 		20.1
(-2.6)
P 		21.6
(-2.5)
P 		38.3
(-0.9)
P 		81.6
(3)
P 		66
C 6.2
(-3)
A 		27.5
(-0.7)
P 		15.7
(-2)
P 		14.4
(-2.1)
P 		43.9
(1)
P 		62.8
(3)
P 		57
avr 12.5
(-3) 		25.4
(-1.7) 		18.4
(-2.4) 		18.7
(-2.4) 		41.8
(0.1) 		70
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11296
Sequence Type Exemplar sequence
Representative Public ID F45F2.11 NCBI
Target Description F45F2.11 /REP_DB=WormBase Gene ID /WP=CE10536 /TR=Q22975 /GB=AAC48032.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072792 NCBI Caenorhabditis elegans F45F2.11 (F45F2.11) mRNA, complete cds. 11/11 None
SNAP00000030767 ENSEMBL cdna:SNAP chromosome:CEL140:V:8521935:8523898:-1 11/11 None
GENEFINDER00000030785 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8521935:8523627:-1 11/11 None
F45F2.11 ENSEMBL cdna:known chromosome:CEL140:V:8521935:8523394:-1 gene:F45F2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8521935-8523354(-) 99.92 99.92
Public Domain and Genome References
Gene Title
Ensembl F45F2.11
Entrez Gene 185810 Entrez gene
SwissProt Q22975 EMBL-EBI
WormBase CE10536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48032 Hypothetical protein F45F2.11 [Caenorhabditis elegans] ref|NP_505193.1| F45F2.11 [Caenorhabditis elegans] 1.0E-137
blast AAC48032 Hypothetical protein F45F2.11 [Caenorhabditis elegans] ref|NP_505193.1| F45F2.11 [Caenorhabditis elegans] 1.0E-136
blast AAC48032 Hypothetical protein F45F2.11 [Caenorhabditis elegans] ref|NP_505193.1| F45F2.11 [Caenorhabditis elegans] 1.0E-123
blast CAE58383 Hypothetical protein CBG01512 [Caenorhabditis briggsae] 2.0E-69
blast CAE58383 Hypothetical protein CBG01512 [Caenorhabditis briggsae] 1.0E-62
Sequence
Target Sequence 
>C. ELEGANS:185948_AT
gatgggtgtcaagattcctgatcgatatccgaatttacctccgaaaattgaaccgtaccg
agacattgagtcagaagaagcagctcactggactgagatgtcatcacaatcatcctcgga
aggggaatattcagacgcttctgagagtgcgaagctagtgcaaacgttgaatagaagaaa
aaataaggaacgaagggaaacgaggaagataagaattgttgcaagtatgctcacatcttc
gactttttcaatgaagaaaaaaaggaaaaatgaaggacttgattttaaacatgaaacatt
tccgagagattatgattataaagaaaaaacactttctacattcattcctccgagaattgc
ccgtcgtcctcctattcctccaccgcaattcttctttccaccatcaccacatttcagccg
tgagcctcactcgctcccaccaatgccgatgatgttgcctatcccattaccaccgatgtc
actatcctctccaatctcgccaatccatttccaaaaaaatcttcagtctactccagaacg
tccttctcgaactgattcttctcgagtccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGTGTCAAGATTCCTGATCGA 561 407 609 Antisense
GATCGATATCCGAATTTACCTCCGA 217 401 628 Antisense
TGTCATCACAATCATCCTCGGAAGG 89 559 707 Antisense
GCAAGTATGCTCACATCTTCGACTT 339 321 829 Antisense
AAAACACTTTCTACATTCATTCCTC 91 131 934 Antisense
CATTCATTCCTCCGAGAATTGCCCG 558 215 947 Antisense
CCATCACCACATTTCAGCCGTGAGC 409 271 1009 Antisense
CAATGCCGATGATGTTGCCTATCCC 96 183 1049 Antisense
AATCTTCAGTCTACTCCAGAACGTC 275 169 1126 Antisense
AGAACGTCCTTCTCGAACTGATTCT 518 73 1143 Antisense
TCGAACTGATTCTTCTCGAGTCCAC 529 601 1155 Antisense
Sequence Source Affymetrix Proprietary Database