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[185946_at]

Description F26D11.5 /REP_DB=WormBase Gene ID /WP=CE17709 /TR=O61962 /GB=AAC17748.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 27.8
(3)
A 		5.8
(-2.7)
A 		4.6
(-3)
A 		25
(2.3)
A 		23
B 7.2
(-2.7)
A 		5.3
(-3)
A 		42.5
(3)
A 		7.6
(-2.6)
A 		37
C 48.7
(2.3)
A 		49.9
(2.4)
A 		4.3
(-3)
A 		54.7
(3)
A 		50
avr 27.9
(2.4) 		20.3
(-1.4) 		17.1
(-3) 		29.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 3.9
(-2.8)
A 		46
(3)
A 		5
(-2.6)
A 		2.3
(-3)
A 		3.1
(-2.9)
A 		12.9
(-1.5)
A 		44
B 34.5
(2.9)
A 		4.2
(-2.9)
A 		35
(3)
A 		3.6
(-3)
A 		23.5
(0.8)
A 		13.8
(-1.1)
A 		31
C 6.2
(-2.6)
A 		55
(3)
A 		8
(-2.4)
A 		12.8
(-1.8)
A 		5.2
(-2.7)
A 		2.7
(-3)
A 		52
avr 14.9
(-1.2) 		35.1
(3) 		16
(-1) 		6.2
(-3) 		10.6
(-2.1) 		9.8
(-2.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.1
(3)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		3.7
(-1.3)
A 		9
B 2.3
(-2.3)
A 		1.3
(-3)
A 		9.8
(3)
A 		1.6
(-2.8)
A 		9
C 16.1
(3)
A 		14.4
(2.3)
A 		1.5
(-3)
A 		9.2
(0.2)
A 		15
avr 9.5
(3) 		5.7
(-1.3) 		4.2
(-3) 		4.8
(-2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.7
(-3)
A 		16.4
(3)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		3.1
(-2.1)
A 		16
B 12
(3)
A 		1.4
(-2.8)
A 		8.5
(1.1)
A 		1
(-3)
A 		9.5
(1.6)
A 		5.1
(-0.8)
A 		11
C 2.3
(-2.5)
A 		16.8
(3)
A 		2
(-2.6)
A 		2.6
(-2.4)
A 		1.7
(-2.7)
A 		0.9
(-3)
A 		16
avr 5
(-0.9) 		11.5
(3) 		3.9
(-1.5) 		1.4
(-3) 		4
(-1.5) 		3
(-2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11781
Sequence Type Exemplar sequence
Representative Public ID F26D11.5 NCBI
Target Description F26D11.5 /REP_DB=WormBase Gene ID /WP=CE17709 /TR=O61962 /GB=AAC17748.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072645 NCBI Caenorhabditis elegans F26D11.5 (F26D11.5) mRNA, complete cds. 11/11 None
SNAP00000012536 ENSEMBL cdna:SNAP chromosome:CEL140:V:7954216:7955546:-1 11/11 None
GENEFINDER00000012555 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7954216:7955546:-1 11/11 None
F26D11.5 ENSEMBL cdna:known chromosome:CEL140:V:7954216:7955546:-1 gene:F26D11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7954216-7955547(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D11.5
Entrez Gene 184976 Entrez gene
SwissProt O61962 EMBL-EBI
WormBase CE17709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17748 Hypothetical protein F26D11.5 [Caenorhabditis elegans] ref|NP_505046.1| F26D11.5 [Caenorhabditis elegans] 1.0E-145
blast AAC17748 Hypothetical protein F26D11.5 [Caenorhabditis elegans] ref|NP_505046.1| F26D11.5 [Caenorhabditis elegans] 1.0E-142
blast AAC17744 Hypothetical protein F26D11.9 [Caenorhabditis elegans] ref|NP_505048.1| F26D11.9 [Caenorhabditis elegans] 4.0E-28
blast AAC17744 Hypothetical protein F26D11.9 [Caenorhabditis elegans] ref|NP_505048.1| F26D11.9 [Caenorhabditis elegans] 2.0E-27
blast CAE64024 Hypothetical protein CBG08619 [Caenorhabditis briggsae] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185946_AT
tctcagatactggtcccgtgaattttaatgtgtttgaggatgtgccggacgcaacaaata
aatctattgctgaatacgaaaagattgaacccgacgaaatttgcatgctccaatacggaa
agtgcccacaaggaaactggagaatgttcagaagacaaaacgaaacggtttgcttgaaag
tcatgaatgggtgtcattatggtacaccattgagaaaaaatgcagctgaaaaatattgtc
gagaggaagcagacggacgtctcatggcaatatccagccatgaagaacgggagtggttgc
acacgctcggtattatatttcacaacgatgcacccttgcttattgctggacaccgcaatc
gagaatgcaaattaaatccaaatcagaatcaagaattgtgtagcaatagaacaacgaaat
acctcgaagctgatggaacaaataattacacatatctttattcatttgataattggctcg
aggctgctgatgatgattgcgttggctatcgtcaaaccgatatttctgtgaaaagtttgc
tgatatccagcaaactatgcgatccaataccggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCAGATACTGGTCCCGTGAATTT 568 611 176 Antisense
TGTGTTTGAGGATGTGCCGGACGCA 423 555 204 Antisense
GAACCCGACGAAATTTGCATGCTCC 89 347 262 Antisense
GACGGACGTCTCATGGCAATATCCA 105 377 427 Antisense
AGAACGGGAGTGGTTGCACACGCTC 473 73 459 Antisense
GCACACGCTCGGTATTATATTTCAC 444 317 474 Antisense
CACAACGATGCACCCTTGCTTATTG 280 193 496 Antisense
CCTTGCTTATTGCTGGACACCGCAA 325 269 509 Antisense
AATTGGCTCGAGGCTGCTGATGATG 537 179 646 Antisense
GATTGCGTTGGCTATCGTCAAACCG 231 431 670 Antisense
GCAAACTATGCGATCCAATACCGGG 145 319 725 Antisense
Sequence Source Affymetrix Proprietary Database