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[185945_at]

Description C44B12.6 /REP_DB=WormBase Gene ID /WP=CE16922 /TR=O44146 /GB=AAB88329.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 2.7
(-3)
A 		6
(-1.6)
A 		16.9
(3)
A 		5.2
(-1.9)
A 		14
B 10.7
(3)
A 		5.5
(-3)
A 		5.8
(-2.7)
A 		9
(1)
A 		5
C 8.2
(-2.7)
A 		14.5
(-2.2)
A 		3.8
(-3)
A 		80.6
(3)
A 		77
avr 7.2
(-3) 		8.7
(-2.6) 		8.8
(-2.6) 		31.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 3.9
(-3)
A 		18.7
(3)
A 		16.3
(2)
A 		3.9
(-3)
A 		10.2
(-0.4)
A 		10.2
(-0.4)
A 		15
B 14.5
(1.8)
A 		17.4
(3)
A 		13.3
(1.3)
A 		4.3
(-2.6)
A 		3.3
(-3)
A 		17
(2.8)
A 		14
C 4.3
(-3)
A 		7
(-2.6)
A 		12.5
(-1.7)
A 		4.9
(-2.9)
A 		10.8
(-2)
A 		43.2
(3)
A 		39
avr 7.6
(-2) 		14.4
(0.1) 		14
(0) 		4.4
(-3) 		8.1
(-1.8) 		23.5
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-2.7)
A 		1.3
(-2.2)
A 		4.4
(3)
A 		0.8
(-3)
A 		4
B 3.4
(3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		1.9
(-1.3)
A 		2
C 2.7
(-2.3)
A 		4.2
(-1.6)
A 		1.3
(-3)
A 		13.6
(3)
A 		12
avr 2.4
(-2.8) 		2.3
(-3) 		2.3
(-3) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.7
(-3)
A 		6.7
(3)
A 		3.5
(-0.2)
A 		1
(-2.7)
A 		3.1
(-0.6)
A 		2.5
(-1.2)
A 		6
B 5
(1.5)
A 		5.8
(2.4)
A 		3.2
(-0.6)
A 		1.1
(-3)
A 		1.4
(-2.7)
A 		6.3
(3)
A 		5
C 1.6
(-2.7)
A 		2.1
(-2.5)
A 		3.2
(-2)
A 		1
(-3)
A 		3.5
(-1.9)
A 		14.5
(3)
A 		14
avr 2.4
(-1.8) 		4.9
(0.4) 		3.3
(-1) 		1
(-3) 		2.7
(-1.5) 		7.8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11028
Sequence Type Exemplar sequence
Representative Public ID C44B12.6 NCBI
Target Description C44B12.6 /REP_DB=WormBase Gene ID /WP=CE16922 /TR=O44146 /GB=AAB88329.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067642 NCBI Caenorhabditis elegans C44B12.6 (C44B12.6) mRNA, complete cds. 11/11 None
SNAP00000003001 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1129148:1132683:-1 10/11 None
GENEFINDER00000003008 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1129148:1132764:-1 10/11 None
C44B12.6 ENSEMBL cdna:known chromosome:CEL140:IV:1129818:1132683:-1 gene:C44B12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1129823-1132689(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B12.6
Entrez Gene 183438 Entrez gene
SwissProt O44146 EMBL-EBI
WormBase CE16922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500043 C44B12.6 [Caenorhabditis elegans] gb|AAB88329.1| Hypothetical protein C44B12.6 [Caenorhabditis elegans] 2.0E-80
blast NP_500043 C44B12.6 [Caenorhabditis elegans] gb|AAB88329.1| Hypothetical protein C44B12.6 [Caenorhabditis elegans] 6.0E-76
blast NP_500043 C44B12.6 [Caenorhabditis elegans] gb|AAB88329.1| Hypothetical protein C44B12.6 [Caenorhabditis elegans] 9.0E-76
blast CAA90671 Hypothetical protein T22H6.1 [Caenorhabditis elegans] ref|NP_510131.1| T22H6.1 [Caenorhabditis elegans] 7.0E-22
blast CAE57216 Hypothetical protein CBG00075 [Caenorhabditis briggsae] 4.0E-21
blast CAA90671 Hypothetical protein T22H6.1 [Caenorhabditis elegans] ref|NP_510131.1| T22H6.1 [Caenorhabditis elegans] 1.0E-20
blast CAE57216 Hypothetical protein CBG00075 [Caenorhabditis briggsae] 3.0E-20
blast CAA90671 Hypothetical protein T22H6.1 [Caenorhabditis elegans] ref|NP_510131.1| T22H6.1 [Caenorhabditis elegans] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185945_AT
tgcacgaggcgttctcaaggcttataaatcgacgggatgaggatatgttctcgtttttcc
agccagattcacaggtgacttccagaaaaatttgtaaattccttttaaagcttgaaaaac
ttatctttctcgaataccaacccctgcaccgacacatgctcacaccaaaatcccgggatt
gctcggagccgtcaatcgataaatcatcagaagtattaccggatcaaccgttatccgaac
gatccatatgcccatatcatcacattttgaattacgacgagaaaaggatacccgccgcaa
tttcagaagtcgagtgttcctgtccgcatgtgaaggttcatggcggcataatccactgcg
agccaatgatgtacaacatgcgagtgatgctcttcgacgactcgtgcgacaaatatgtgg
aacgagtacaaaaagtcgcacttgcgtgtgttccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACGAGGCGTTCTCAAGGCTTAT 133 577 14 Antisense
TCGTTTTTCCAGCCAGATTCACAGG 42 605 64 Antisense
ATTGCTCGGAGCCGTCAATCGATAA 346 5 191 Antisense
GTTATCCGAACGATCCATATGCCCA 540 447 243 Antisense
ATACCCGCCGCAATTTCAGAAGTCG 357 23 301 Antisense
TCAGAAGTCGAGTGTTCCTGTCCGC 355 611 316 Antisense
GTTCCTGTCCGCATGTGAAGGTTCA 411 441 329 Antisense
GGTTCATGGCGGCATAATCCACTGC 229 507 348 Antisense
AATCCACTGCGAGCCAATGATGTAC 524 167 363 Antisense
CATGCGAGTGATGCTCTTCGACGAC 333 211 390 Antisense
AAAGTCGCACTTGCGTGTGTTCCGG 613 119 445 Antisense
Sequence Source Affymetrix Proprietary Database