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[185944_at]

Description Y38E10A.7 /REP_DB=WormBase Gene ID /WP=CE21587 /TR=Q9NAK4 /GB=CAB54398.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1432
1 2 3 4 range
A 143.5
(-3)
A 		327.7
(-2.2)
P 		318.5
(-2.3)
P 		1575.8
(3)
P 		1432
B 158.8
(-3)
A 		286.2
(-2.4)
P 		244
(-2.6)
M 		1476.3
(3)
P 		1318
C 209
(-3)
M 		302.5
(-2.6)
P 		328.2
(-2.5)
P 		1564.2
(3)
P 		1355
avr 170.4
(-3) 		305.5
(-2.4) 		296.9
(-2.4) 		1538.8
(3) 		1368

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1817
1 2 3 4 5 6 range
A 3.5
(-3)
A 		18.4
(-3)
A 		11.5
(-3)
A 		8.1
(-3)
A 		686.3
(-0.7)
P 		1819.3
(3)
P 		1816
B 6.7
(-3)
A 		2.7
(-3)
A 		5.3
(-3)
A 		21.6
(-2.9)
A 		614
(-0.9)
P 		1772.8
(3)
P 		1770
C 2.4
(-3)
A 		10
(-3)
A 		9.2
(-3)
A 		31
(-2.9)
A 		811.6
(0)
P 		1609.9
(3)
P 		1608
avr 4.2
(-3) 		10.4
(-3) 		8.7
(-3) 		20.2
(-2.9) 		704
(-0.6) 		1734
(3) 		1730
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 52.3
(-3)
A 		71.1
(-2.4)
P 		83.3
(-2)
P 		230.7
(3)
P 		178
B 50.6
(-3)
A 		70.7
(-2.5)
P 		56.5
(-2.9)
M 		314.6
(3)
P 		264
C 69.2
(-3)
M 		87
(-2.5)
P 		114.4
(-1.6)
P 		263.7
(3)
P 		195
avr 57.4
(-3) 		76.3
(-2.5) 		84.7
(-2.2) 		269.7
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 661
1 2 3 4 5 6 range
A 0.6
(-3)
A 		6.5
(-2.9)
A 		2.5
(-3)
A 		2
(-3)
A 		207.1
(-0.2)
P 		443
(3)
P 		442
B 2.3
(-3)
A 		0.9
(-3)
A 		1.3
(-3)
A 		5.7
(-3)
A 		249.5
(-0.7)
P 		661.1
(3)
P 		660
C 0.9
(-3)
A 		3.1
(-3)
A 		2.3
(-3)
A 		6.2
(-2.9)
A 		262.6
(-0.1)
P 		538.9
(3)
P 		538
avr 1.3
(-3) 		3.5
(-3) 		2
(-3) 		4.6
(-3) 		239.7
(-0.4) 		547.7
(3) 		546
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3341
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.7 NCBI
Target Description Y38E10A.7 /REP_DB=WormBase Gene ID /WP=CE21587 /TR=Q9NAK4 /GB=CAB54398.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064289 NCBI Caenorhabditis elegans Y38E10A.7 (Y38E10A.7) mRNA, complete cds. 11/11 None
SNAP00000017430 ENSEMBL cdna:SNAP chromosome:CEL140:II:12605877:12606892:1 11/11 None
GENEFINDER00000017475 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12605877:12606892:1 11/11 None
Y38E10A.7 ENSEMBL cdna:known chromosome:CEL140:II:12605869:12606928:1 gene:Y38E10A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12605873-12606889(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.7
Entrez Gene 174895 Entrez gene
SwissProt Q9NAK4 EMBL-EBI
WormBase CE21587 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54398 Hypothetical protein Y38E10A.7 [Caenorhabditis elegans] ref|NP_496690.1| Y38E10A.7 [Caenorhabditis elegans] 1.0E-152
blast AAK31544 Hypothetical protein R07G3.2 [Caenorhabditis elegans] ref|NP_495596.3| R07G3.2 [Caenorhabditis elegans] 8.0E-75
blast CAE67500 Hypothetical protein CBG13010 [Caenorhabditis briggsae] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 3.9E-69
Sequence
Target Sequence 
>C. ELEGANS:185944_AT
tacctttgctccgcaagcagcatacttcagagcaaatggatggtcagaggagactgtata
tgctaccacatacggtgacgcaggagttactacggctacaaatgtaaaaatgctttgtga
atatgtgcaacagatcagaaatatgatcattgctgtgaacgccttcactcagcaaaaagt
aaatgtcattggttactccatgggatccccaattgccagaaaagccatccttggtggaaa
atgcgctgagaatactgttcaattgggagctccactgactagtatcatagaaacctatat
ttctgtggctggtgctaatcgtggtacatcactctgtgacattctttttgctccactggt
tgtgccaacatgtaacacgaaaaatggactcaaatgttcatcagattttcttacagacat
ccgtagtgtctcagcttacgagggacaatacatcttctcaatctatggacctagcgatga
caaggtcggatttaacaccgtttgtggacgtgtttctagaattgatggagcaacggccga
aaaggataatgttcccggaaaccacgacgctatcatcgctaacacagttggcgccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCTTTGCTCCGCAAGCAGCATAC 44 651 246 Antisense
GTGACGCAGGAGTTACTACGGCTAC 192 481 320 Antisense
TGCTGTGAACGCCTTCACTCAGCAA 354 583 396 Antisense
TTGGTTACTCCATGGGATCCCCAAT 247 665 434 Antisense
TGGGAGCTCCACTGACTAGTATCAT 698 553 509 Antisense
GGCTGGTGCTAATCGTGGTACATCA 20 541 552 Antisense
CTCTGTGACATTCTTTTTGCTCCAC 435 229 577 Antisense
GACATCCGTAGTGTCTCAGCTTACG 398 369 661 Antisense
AGGGACAATACATCTTCTCAATCTA 235 59 686 Antisense
TAATGTTCCCGGAAACCACGACGCT 650 627 792 Antisense
CATCGCTAACACAGTTGGCGCCACC 246 211 819 Antisense
Sequence Source Affymetrix Proprietary Database