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[185943_at]

Description F57B10.4 /REP_DB=WormBase Gene ID /WP=CE11304 /TR=O44741 /GB=AAB96721.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      4grp_high_8_8 > 22      6grp_total > 87      4grp_total > 26      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 71.9
(-3)
P 		109.2
(3)
P 		84.7
(-0.9)
P 		93
(0.4)
A 		37
B 98.3
(-1.5)
P 		105.2
(-0.7)
P 		85.8
(-3)
P 		135.8
(3)
P 		50
C 78.6
(-3)
P 		87.7
(-1.8)
P 		105.1
(0.5)
P 		124.2
(3)
P 		46
avr 82.9
(-3) 		100.7
(0.1) 		91.9
(-1.4) 		117.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 65.8
(-3)
A 		87
(-2.8)
P 		104.1
(-2.6)
P 		199.3
(-1.5)
P 		287.6
(-0.4)
P 		586.4
(3)
P 		521
B 71
(-3)
P 		88.4
(-2.7)
P 		115.6
(-2.4)
P 		145.5
(-1.9)
P 		288.2
(0.1)
P 		487.6
(3)
P 		417
C 74.2
(-2.7)
P 		48.2
(-3)
A 		118.1
(-2.2)
P 		183
(-1.5)
P 		282
(-0.4)
P 		587
(3)
P 		539
avr 70.3
(-3) 		74.5
(-2.9) 		112.6
(-2.5) 		175.9
(-1.7) 		285.9
(-0.3) 		553.7
(3) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.2
(3)
P 		23.7
(1.8)
P 		22.1
(1)
P 		13.6
(-3)
A 		13
B 31.4
(3)
P 		26
(0.2)
P 		19.9
(-3)
P 		28.9
(1.7)
P 		12
C 26
(-1.1)
P 		25.2
(-1.4)
P 		36.6
(3)
P 		20.9
(-3)
P 		16
avr 27.9
(3) 		25
(0.4) 		26.2
(1.5) 		21.1
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 12.1
(-3)
A 		31
(-2.1)
P 		22.7
(-2.5)
P 		50.5
(-1.2)
P 		86.8
(0.4)
P 		142.8
(3)
P 		131
B 24.7
(-3)
P 		29.4
(-2.8)
P 		28.1
(-2.9)
P 		38.5
(-2.5)
P 		117.1
(0.5)
P 		181.8
(3)
P 		157
C 27.5
(-2.6)
P 		14.7
(-3)
A 		30.1
(-2.5)
P 		36.8
(-2.3)
P 		91.3
(-0.5)
P 		196.5
(3)
P 		182
avr 21.4
(-3) 		25
(-2.9) 		27
(-2.8) 		41.9
(-2.2) 		98.4
(0) 		173.7
(3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1435
Sequence Type Exemplar sequence
Representative Public ID F57B10.4 NCBI
Target Description F57B10.4 /REP_DB=WormBase Gene ID /WP=CE11304 /TR=O44741 /GB=AAB96721.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059494(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059494 NCBI Caenorhabditis elegans F57B10.4 (F57B10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000011840 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6574307:6576900:1 11/11 None
SNAP00000011834 ENSEMBL cdna:SNAP chromosome:CEL140:I:6574335:6576900:1 11/11 None
F57B10.4 ENSEMBL cdna:known chromosome:CEL140:I:6574307:6576966:1 gene:F57B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6574235-6576829(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B10.4
Entrez Gene 172375 Entrez gene
SwissProt O44741 EMBL-EBI
WormBase CE11304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96721 Hypothetical protein F57B10.4 [Caenorhabditis elegans] ref|NP_491895.1| F57B10.4 [Caenorhabditis elegans] 0.0
blast CAE60542 Hypothetical protein CBG04169 [Caenorhabditis briggsae] 1.0E-60
blast CAE60542 Hypothetical protein CBG04169 [Caenorhabditis briggsae] 7.0E-55
blast AAF60766 Hypothetical protein Y54E10A.12 [Caenorhabditis elegans] ref|NP_491120.1| Y54E10A.12 [Caenorhabditis elegans] 6.0E-52
Sequence
Target Sequence 
>C. ELEGANS:185943_AT
gcattctttaattctccggttagcaaagaacaaacttcaatgcgtccacagttttcaatg
attgctcatatggagaagtatgatacaatgcaggccaagaaaaacatggataaattgcct
gataatgttcgccgagaaagcgaaatggaacacatttcccataattacggccgtccctct
gaagttaaccgcccggcgagtgtttcatctaaacgccacgatccggctgcaagtatatcg
gcaacatcggaagagtcgatcctatctggaaccactcaggatgaatctatgctcaatgat
ttcttcaatccaacaggcaccgacgaaaaacttaacgacgttgagttttccatgactgcg
catgtggcagaattcgataacagacaaaaagcaaaaagagctgcagagcaaattaagaag
agttcttcaaaaatatctggcaaaaaagaggaatcagttgcagatgataaaagctctggc
aacagctacgtagctgaaagtgaagctggcttctcacaaggatctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTCTTTAATTCTCCGGTTAGCA 480 305 1477 Antisense
AGAACAAACTTCAATGCGTCCACAG 678 71 1503 Antisense
GCGTCCACAGTTTTCAATGATTGCT 175 293 1518 Antisense
AATTGCCTGATAATGTTCGCCGAGA 542 177 1589 Antisense
ACACATTTCCCATAATTACGGCCGT 682 103 1626 Antisense
GTTAACCGCCCGGCGAGTGTTTCAT 550 423 1660 Antisense
TTCATCTAAACGCCACGATCCGGCT 582 685 1680 Antisense
GAGTCGATCCTATCTGGAACCACTC 200 399 1729 Antisense
TCTTCAATCCAACAGGCACCGACGA 618 615 1778 Antisense
GACGTTGAGTTTTCCATGACTGCGC 531 375 1813 Antisense
AAGCTGGCTTCTCACAAGGATCTGA 277 149 1979 Antisense
Sequence Source Affymetrix Proprietary Database