[Home] | [Total List]

[185941_at]

Description F20H11.2 /REP_DB=WormBase Gene ID /WP=CE20701 /TR=O01737 /GB=AAD34660.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 55      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 172
(1.7)
A 		158.1
(-0.4)
A 		181.2
(3)
A 		140.1
(-3)
A 		41
B 176
(3)
A 		160.4
(-0.2)
A 		146.6
(-3)
A 		166.7
(1.1)
A 		29
C 170.2
(3)
A 		128.1
(-3)
A 		142
(-1)
A 		140.3
(-1.3)
A 		42
avr 172.7
(3) 		148.9
(-3) 		156.6
(-1.1) 		149
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 268
(3)
P 		124.3
(-0.3)
A 		10.2
(-2.9)
A 		4
(-3)
A 		39.4
(-2.2)
A 		102.1
(-0.8)
A 		264
B 138.6
(3)
M 		131.8
(2.6)
A 		70.8
(-1)
A 		52.4
(-2.1)
A 		37.1
(-3)
A 		107.4
(1.2)
A 		102
C 117.3
(3)
P 		83.3
(0.3)
A 		58.4
(-1.7)
A 		52.5
(-2.2)
A 		42.2
(-3)
A 		64.4
(-1.2)
A 		75
avr 174.6
(3) 		113.1
(0.3) 		46.5
(-2.6) 		36.3
(-3) 		39.6
(-2.9) 		91.3
(-0.6) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 62.6
(3)
A 		34.3
(-1)
A 		47.4
(0.8)
A 		20.5
(-3)
A 		42
B 56.1
(3)
A 		39.6
(-1.5)
A 		34
(-3)
A 		35.5
(-2.6)
A 		22
C 56.3
(3)
A 		36.8
(-0.6)
A 		49.5
(1.7)
A 		23.7
(-3)
A 		33
avr 58.3
(3) 		36.9
(-1.1) 		43.6
(0.2) 		26.6
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 49.4
(3)
P 		44.2
(2.4)
A 		2.2
(-2.9)
A 		1
(-3)
A 		11.9
(-1.6)
A 		24.9
(-0)
A 		48
B 48.2
(3)
M 		43.9
(2.2)
A 		17.2
(-2.4)
A 		13.9
(-3)
A 		15.1
(-2.8)
A 		40
(1.6)
A 		34
C 43.5
(3)
P 		25.4
(-0.3)
A 		14.9
(-2.2)
A 		10.6
(-3)
A 		13.7
(-2.4)
A 		21.6
(-1)
A 		33
avr 47
(3) 		37.8
(1.6) 		11.4
(-2.5) 		8.5
(-3) 		13.6
(-2.2) 		28.8
(0.2) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7213
Sequence Type Exemplar sequence
Representative Public ID F20H11.2 NCBI
Target Description F20H11.2 /REP_DB=WormBase Gene ID /WP=CE20701 /TR=O01737 /GB=AAD34660.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066054 NCBI Caenorhabditis elegans Notch Signaling pathway Homolog family member (nsh-1) (nsh-1) mRNA, complete cds. 11/11 None
GENEFINDER00000039391 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6592997:6601022:-1 11/11 None
SNAP00000039388 ENSEMBL cdna:SNAP chromosome:CEL140:III:6593200:6601022:-1 11/11 None
F20H11.2 ENSEMBL cdna:known chromosome:CEL140:III:6592705:6598465:-1 gene:F20H11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6593481-6598451(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nsh-1
Ensembl F20H11.2
Entrez Gene 175934 Entrez gene
SwissProt O01737 EMBL-EBI
WormBase CE20701 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264125_AT DNA-binding protein, putative at
ATGENOME1:12465_AT DNA-binding protein, putative at
CANINE_2:CFA.18890.1.S1_AT similar to sno, strawberry notch homolog 1 cfa
CANINE_2:CFA.18890.1.S1_S_AT similar to sno, strawberry notch homolog 1 cfa
CANINE_2:CFAAFFX.12129.1.S1_AT similar to sno, strawberry notch homolog 1 cfa
CANINE_2:CFAAFFX.12131.1.S1_S_AT similar to sno, strawberry notch homolog 1 cfa
DROSOPHILA_2:1635992_AT strawberry notch dm
DROSOPHILA_2:1625819_AT strawberry notch dm
DROSGENOME1:152069_AT strawberry notch dm
CHICKEN:GGA.2355.1.S1_AT sno, strawberry notch homolog 1 (Drosophila) gga
CHICKEN:GGAAFFX.2107.1.S1_S_AT sno, strawberry notch homolog 1 (Drosophila) gga
CHICKEN:GGAAFFX.25839.2.S1_S_AT sno, strawberry notch homolog 1 (Drosophila) gga
HG-U133A:218737_AT sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133_PLUS_2:218737_AT sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133A_2:218737_AT sno, strawberry notch homolog 1 (Drosophila) hs
U133_X3P:G8922598_3P_AT sno, strawberry notch homolog 1 (Drosophila) hs
HG-U95D:80197_AT sno, strawberry notch homolog 1 (Drosophila) hs
HG-U95E:85157_AT sno, strawberry notch homolog 1 (Drosophila) hs
U133_X3P:HS.306665.0.S1_3P_AT Sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133A_2:216161_AT Sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133_PLUS_2:216161_AT Sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133A:216161_AT Sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133A_2:216162_AT Sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133_PLUS_2:216162_AT Sno, strawberry notch homolog 1 (Drosophila) hs
HG-U133A:216162_AT Sno, strawberry notch homolog 1 (Drosophila) hs
HG-U95C:63578_AT Sno, strawberry notch homolog 1 (Drosophila) hs
MU11KSUBA:AA407629_RC_AT sno, strawberry notch homolog 1 (Drosophila) mm
MU11KSUBA:AA166384_S_AT sno, strawberry notch homolog 1 (Drosophila) mm
MG-U74AV2:103678_AT sno, strawberry notch homolog 1 (Drosophila) mm
MG-U74AV2:104106_AT sno, strawberry notch homolog 1 (Drosophila) mm
MG-U74BV2:110674_AT sno, strawberry notch homolog 1 (Drosophila) mm
MG-U74AV2:161237_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOE430A:1434612_S_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430A_2:1434612_S_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430_2:1434612_S_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOE430A:1455026_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430A_2:1455026_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430_2:1455026_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOE430A:1451436_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430A_2:1451436_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430_2:1451436_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOE430A:1426559_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430A_2:1426559_AT sno, strawberry notch homolog 1 (Drosophila) mm
MOUSE430_2:1426559_AT sno, strawberry notch homolog 1 (Drosophila) mm
MU19KSUBB:TC32530_AT Sno, strawberry notch homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:3671884) mm
MU19KSUBC:TC35591_AT Sno, strawberry notch homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:3671884) mm
MU19KSUBC:TC38455_AT Sno, strawberry notch homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:3671884) mm
MU19KSUBC:TC41661_AT Sno, strawberry notch homolog 1 (Drosophila), mRNA (cDNA clone IMAGE:3671884) mm
RG-U34B:RC_AA996483_AT sno, strawberry notch homolog 1 (Drosophila) (predicted) rn
RAE230A:1389309_AT sno, strawberry notch homolog 1 (Drosophila) (predicted) rn
RAT230_2:1389309_AT sno, strawberry notch homolog 1 (Drosophila) (predicted) rn
RAE230B:1395406_AT Sno, strawberry notch homolog 1 (Drosophila) (predicted) rn
RAT230_2:1395406_AT Sno, strawberry notch homolog 1 (Drosophila) (predicted) rn
RG-U34B:RC_AI043887_AT Sno, strawberry notch homolog 1 (Drosophila) (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD34660 Notch signaling pathway homolog protein 1 [Caenorhabditis elegans] ref|NP_498455.1| Notch Signaling pathway Homolog family member (nsh-1) [Caenorhabditis elegans] 0.0
blast D88486 protein F20H11.2 [imported] - Caenorhabditis elegans 0.0
blast CAE69179 Hypothetical protein CBG15212 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185941_AT
cttcactggccgcgttgacaatggcagtttccgcgtggaaattcacaaaattggagttga
gcgaggggtcagttgggaagaagccatggagttgcacaaagagcacagcaacgatgatga
cggtttctacatttgtcatcccggcggtgccaacacagcgaacactaagaaagttgctgc
gttggtttatggaatcggaaagattcgaatggacaatggtgctcgtctttatgcaataac
tcgtccttccactggtcgttcaccgaaattgatgacaatggctgacttgagtaaacgttt
ccataaagtttcaatcgatgaagccaaggaggtttggaagcagcaatacgattctgctgc
taacatgtgtcaacacaactacgtctacggcaagtgtcgaaccgaatcaaacggaactta
ttgcgaagtcggtcgtcgtactcgtacctattttgtgctatccggctctgttctctccgt
ttggccaattgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCACTGGCCGCGTTGACAATGGC 8 223 3762 Antisense
TGACAATGGCAGTTTCCGCGTGGAA 5 573 3777 Antisense
CGGTTTCTACATTTGTCATCCCGGC 408 243 3882 Antisense
GGACAATGGTGCTCGTCTTTATGCA 15 527 3972 Antisense
TTTATGCAATAACTCGTCCTTCCAC 200 673 3989 Antisense
TTCCACTGGTCGTTCACCGAAATTG 602 701 4008 Antisense
GATTCTGCTGCTAACATGTGTCAAC 74 433 4111 Antisense
TGTCAACACAACTACGTCTACGGCA 245 559 4129 Antisense
TATTGCGAAGTCGGTCGTCGTACTC 491 663 4180 Antisense
ACTCGTACCTATTTTGTGCTATCCG 210 99 4201 Antisense
TTCTCTCCGTTTGGCCAATTGTGGA 414 691 4232 Antisense
Sequence Source Affymetrix Proprietary Database