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[185940_at]

Description F37C12.1 /REP_DB=WormBase Gene ID /WP=CE00742 /TR=Q20124 /GB=AAC48293.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      6grp_total > 76      4grp_total > 22      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 487
1 2 3 4 range
A 619.2
(3)
P 		331.3
(-3)
A 		368.6
(-2.2)
A 		555
(1.7)
P 		288
B 669.5
(1.6)
P 		421.2
(-1.5)
A 		296
(-3)
M 		782.7
(3)
P 		487
C 722.4
(3)
P 		373.3
(-3)
A 		426.2
(-2.1)
P 		694.7
(2.5)
P 		349
avr 670.4
(2.9) 		375.3
(-2.8) 		363.6
(-3) 		677.5
(3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 626
1 2 3 4 5 6 range
A 358.5
(-3)
A 		593.4
(-0.7)
P 		642.5
(-0.3)
P 		695.2
(0.2)
P 		628.3
(-0.4)
P 		984.1
(3)
P 		626
B 664
(0.3)
P 		475.1
(-3)
P 		687
(0.7)
P 		641.1
(-0.1)
P 		688.9
(0.8)
P 		815.6
(3)
P 		341
C 653.3
(-1.6)
P 		599.1
(-3)
P 		664.8
(-1.3)
P 		616.4
(-2.6)
P 		626.6
(-2.3)
P 		833.3
(3)
P 		234
avr 558.6
(-2.9) 		555.9
(-3) 		664.8
(-1) 		650.9
(-1.2) 		647.9
(-1.3) 		877.7
(3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 225.5
(3)
P 		71.9
(-3)
A 		96.4
(-2)
A 		81.2
(-2.6)
P 		154
B 213.5
(3)
P 		104
(-1.5)
A 		68.6
(-3)
M 		166.8
(1.1)
P 		145
C 239.2
(3)
P 		107.3
(-3)
A 		148.5
(-1.1)
P 		117.1
(-2.6)
P 		132
avr 226.1
(3) 		94.4
(-3) 		104.5
(-2.5) 		121.7
(-1.8) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 66.1
(-3)
A 		211
(2)
P 		139.9
(-0.4)
P 		176.3
(0.8)
P 		189.6
(1.3)
P 		239.6
(3)
P 		174
B 231
(-0)
P 		158.2
(-3)
P 		166.8
(-2.6)
P 		169.8
(-2.5)
P 		279.9
(2)
P 		304.1
(3)
P 		146
C 242.2
(1.6)
P 		182.8
(-0.7)
P 		169.2
(-1.3)
P 		124
(-3)
P 		202.8
(0.1)
P 		279
(3)
P 		155
avr 179.8
(-1.8) 		184
(-1.6) 		158.6
(-2.9) 		156.7
(-3) 		224.1
(0.4) 		274.2
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7393
Sequence Type Exemplar sequence
Representative Public ID F37C12.1 NCBI
Target Description F37C12.1 /REP_DB=WormBase Gene ID /WP=CE00742 /TR=Q20124 /GB=AAC48293.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066175 NCBI Caenorhabditis elegans F37C12.1 (F37C12.1) mRNA, complete cds. 11/11 None
SNAP00000030592 ENSEMBL cdna:SNAP chromosome:CEL140:III:7184272:7187719:1 11/11 None
GENEFINDER00000030613 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7186126:7187719:1 10/11 None
F37C12.1 ENSEMBL cdna:known chromosome:CEL140:III:7184272:7187735:1 gene:F37C12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7184269-7187717(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C12.1
Entrez Gene 176010 Entrez gene
SwissProt Q20124 EMBL-EBI
WormBase CE00742 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262521_AT cell cycle control protein-related at
CANINE_2:CFAAFFX.29178.1.S1_AT similar to CG8435-PA cfa
DROSOPHILA_2:1631074_AT dm
DROSGENOME1:154610_AT dm
HG-U133A:204335_AT hypothetical protein FLJ10374 hs
HG-U133_PLUS_2:204335_AT hypothetical protein FLJ10374 hs
HG-U133A_2:204335_AT hypothetical protein FLJ10374 hs
HU35KSUBB:RC_Z41349_AT hypothetical protein FLJ10374 hs
U133_X3P:G8922381_3P_AT hypothetical protein FLJ10374 hs
HG-U95AV2:39211_AT hypothetical protein FLJ10374 hs
MOUSE430_2:1440956_AT RIKEN cDNA 2900016D05 gene mm
MOE430B:1440956_AT RIKEN cDNA 2900016D05 gene mm
MG-U74AV2:104502_F_AT RIKEN cDNA 2900016D05 gene mm
MG-U74BV2:113266_AT RIKEN cDNA 2900016D05 gene mm
MG-U74BV2:164234_AT RIKEN cDNA 2900016D05 gene mm
MOE430B:1429733_AT RIKEN cDNA 2900016D05 gene mm
MOUSE430_2:1429733_AT RIKEN cDNA 2900016D05 gene mm
MU19KSUBA:TC24030_AT RIKEN cDNA 2900016D05 gene, mRNA (cDNA clone MGC:36340 IMAGE:4952601) mm
RG-U34B:RC_AI012017_AT similar to RIKEN cDNA 2900016D05 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48293 Hypothetical protein F37C12.1 [Caenorhabditis elegans] ref|NP_498576.1| F37C12.1 [Caenorhabditis elegans] 1.0E-153
blast CAE70148 Hypothetical protein CBG16611 [Caenorhabditis briggsae] 1.0E-137
blast AAC48293 Hypothetical protein F37C12.1 [Caenorhabditis elegans] ref|NP_498576.1| F37C12.1 [Caenorhabditis elegans] 2.0E-78
blast CAE70148 Hypothetical protein CBG16611 [Caenorhabditis briggsae] 6.0E-66
blast XP_576700 PREDICTED: similar to RIKEN cDNA 2900016D05 [Rattus norvegicus] 8.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR007590 EMBL-EBI Protein of unknown function DUF572 1.0E-126
Pfam IPR007590 EMBL-EBI Protein of unknown function DUF572 2.0E-51
Pfam IPR007590 EMBL-EBI Protein of unknown function DUF572 2.6E-6
Sequence
Target Sequence 
>C. ELEGANS:185940_AT
gaaggatcccatgaaaatgctcgaaaagagaacaatgcaaagtcgtcaagaaatggaaga
aatgggaaatctggaagatcttcaagaatcaagcagaacgaaagaatgtatcgacaccat
tggtttcttgtcgtcaactgatcctcatatcgcacaagctcagagaattaaaatgatgga
ggacgaggatgatcgaatggcaagagaactcatgggaatcacttcagaaggacgaatcga
gcgacgtattaaggatgatgaggataactcagatggtgcagatgaagatgataaagatat
tcctggtccaagcgcatcggttgttccatctacttcttccatgcttaaaccagcgatccc
gaaacttggaatggatgattcagggaattcaagaaaacgaaatgagcagagagatcgatt
cgcgggaataaaattgatcaaaaaagcgaagccatctgaaccttctacatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGATCCCATGAAAATGCTCGAA 58 335 405 Antisense
ACACCATTGGTTTCTTGTCGTCAAC 629 109 518 Antisense
TGTCGTCAACTGATCCTCATATCGC 692 557 533 Antisense
GATCCTCATATCGCACAAGCTCAGA 114 417 544 Antisense
GAGAACTCATGGGAATCACTTCAGA 53 393 608 Antisense
GAAGGACGAATCGAGCGACGTATTA 287 333 631 Antisense
AAGATATTCCTGGTCCAAGCGCATC 640 155 698 Antisense
CATCTACTTCTTCCATGCTTAAACC 704 211 731 Antisense
GCTTAAACCAGCGATCCCGAAACTT 696 299 747 Antisense
TGAGCAGAGAGATCGATTCGCGGGA 558 569 807 Antisense
GAAGCCATCTGAACCTTCTACATCT 460 345 852 Antisense
Sequence Source Affymetrix Proprietary Database