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[185939_at]

Description Y106G6A.4 /REP_DB=WormBase Gene ID /WP=CE19297 /TR=Q9XWQ2 /GB=CAA21597.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 56      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 24.4
(-2)
A 		18.2
(-3)
A 		53.7
(3)
A 		23.8
(-2.1)
A 		36
B 4.3
(-3)
A 		21.4
(-0.5)
A 		45.3
(3)
A 		15.7
(-1.3)
A 		41
C 9.1
(-2.2)
A 		35.9
(3)
A 		28.3
(1.5)
A 		4.8
(-3)
A 		31
avr 12.6
(-3) 		25.2
(-0.5) 		42.4
(3) 		14.8
(-2.6) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 4.3
(-3)
A 		19.4
(-2.5)
A 		23.3
(-2.4)
A 		52.7
(-1.5)
A 		80.5
(-0.6)
P 		194.8
(3)
P 		191
B 15.3
(-2.4)
A 		41.9
(-1)
A 		4.8
(-3)
A 		47.1
(-0.8)
A 		60.9
(-0)
M 		117.8
(3)
P 		113
C 3.9
(-3)
A 		29.1
(-2)
A 		18
(-2.4)
A 		28.5
(-2)
A 		80.3
(0.1)
P 		151.6
(3)
P 		148
avr 7.8
(-3) 		30.1
(-2.1) 		15.4
(-2.7) 		42.8
(-1.6) 		73.9
(-0.3) 		154.7
(3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.9
(0.1)
A 		4
(-2.7)
A 		14
(3)
A 		3.5
(-3)
A 		11
B 1.4
(-3)
A 		5.3
(-0.4)
A 		10.5
(3)
A 		3.3
(-1.7)
A 		9
C 3
(-1.6)
A 		10.3
(3)
A 		9.8
(2.7)
A 		0.8
(-3)
A 		10
avr 4.4
(-1.7) 		6.5
(-0.3) 		11.4
(3) 		2.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 0.8
(-3)
A 		6.9
(-2.2)
A 		5.1
(-2.4)
A 		13.4
(-1.4)
A 		24.3
(0)
P 		47.4
(3)
P 		47
B 5.3
(-2.4)
A 		13.9
(-1.2)
A 		1.2
(-3)
A 		12.5
(-1.4)
A 		24.8
(0.3)
M 		43.9
(3)
P 		43
C 1.4
(-3)
A 		8.9
(-2.1)
A 		4.6
(-2.6)
A 		5.7
(-2.5)
A 		26
(-0)
P 		50.8
(3)
P 		49
avr 2.5
(-3) 		9.9
(-2) 		3.6
(-2.9) 		10.5
(-1.9) 		25
(0) 		47.4
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185939_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2097
Sequence Type Exemplar sequence
Representative Public ID Y106G6A.4 NCBI
Target Description Y106G6A.4 /REP_DB=WormBase Gene ID /WP=CE19297 /TR=Q9XWQ2 /GB=CAA21597.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060224 NCBI Caenorhabditis elegans Y106G6A.4 (Y106G6A.4) mRNA, complete cds. 11/11 None
SNAP00000021905 ENSEMBL cdna:SNAP chromosome:CEL140:I:9939576:9939959:1 11/11 None
GENEFINDER00000021911 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9939576:9939959:1 11/11 None
Y106G6A.4 ENSEMBL cdna:known chromosome:CEL140:I:9939262:9939989:1 gene:Y106G6A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9939506-9939890(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6A.4
Entrez Gene 172848 Entrez gene
SwissProt Q9XWQ2 EMBL-EBI
WormBase CE30569 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD30438 Hypothetical protein Y106G6A.4 [Caenorhabditis elegans] emb|CAA21597.2| Hypothetical protein Y106G6A.4 [Caenorhabditis elegans] ref|NP_492625.2| Y106G6A.4 [Caenorhabditis elegans] 6.0E-84
blast CAE60258 Hypothetical protein CBG03833 [Caenorhabditis briggsae] 4.0E-61
blast CAD30438 Hypothetical protein Y106G6A.4 [Caenorhabditis elegans] emb|CAA21597.2| Hypothetical protein Y106G6A.4 [Caenorhabditis elegans] ref|NP_492625.2| Y106G6A.4 [Caenorhabditis elegans] 2.0E-55
blast CAE60258 Hypothetical protein CBG03833 [Caenorhabditis briggsae] 2.0E-39
blast CAE60262 Hypothetical protein CBG03837 [Caenorhabditis briggsae] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:185939_AT
tgaaaaactctgcagcctctttcaatcactctggagagcagttcgataagcttttcgaag
cttgtaacacattcaaggatcaaatcaatggaaacgtccttgccaaattgatcagtttca
aagatgtggaatgcaaggatgtcgacactcaaatgacccagttgaagaaggctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAAACTCTGCAGCCTCTTTCAA 464 571 14 Antisense
AGCCTCTTTCAATCACTCTGGAGAG 148 83 27 Antisense
CAATCACTCTGGAGAGCAGTTCGAT 221 181 36 Antisense
CTGGAGAGCAGTTCGATAAGCTTTT 117 241 44 Antisense
GCTTTTCGAAGCTTGTAACACATTC 261 303 63 Antisense
GTAACACATTCAAGGATCAAATCAA 670 461 77 Antisense
CAAATCAATGGAAACGTCCTTGCCA 423 185 94 Antisense
GGAAACGTCCTTGCCAAATTGATCA 567 525 103 Antisense
GTCCTTGCCAAATTGATCAGTTTCA 238 477 109 Antisense
ACACTCAAATGACCCAGTTGAAGAA 222 111 158 Antisense
AATGACCCAGTTGAAGAAGGCTCAG 114 153 165 Antisense
Sequence Source Affymetrix Proprietary Database