[Home] | [Total List]

[185938_at]

Description Y51A2D.16 /REP_DB=WormBase Gene ID /WP=CE19212 /TR=Q9XXR0 /GB=CAA16403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      6grp_total > 92      4grp_total > 59      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 78.9
(0.2)
P 		118.1
(3)
P 		98
(1.6)
P 		33.3
(-3)
A 		85
B 81.2
(-0.9)
P 		151.2
(3)
P 		131.1
(1.9)
P 		42.9
(-3)
A 		108
C 104.6
(1.8)
A 		121.8
(2.9)
P 		123.6
(3)
P 		28.4
(-3)
A 		95
avr 88.2
(0.3) 		130.4
(3) 		117.6
(2.2) 		34.9
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 117.8
(-1.1)
M 		198.3
(3)
P 		79.9
(-3)
P 		131.9
(-0.4)
P 		170.5
(1.6)
P 		132.6
(-0.3)
P 		118
B 169.5
(1.5)
P 		142.2
(0.2)
P 		95.2
(-2.2)
P 		142.4
(0.2)
P 		199
(3)
P 		79.3
(-3)
P 		120
C 127.1
(-0.4)
P 		98.3
(-2)
P 		143.1
(0.5)
P 		135.2
(0.1)
P 		185.8
(3)
P 		81.5
(-3)
P 		104
avr 138.1
(-0.2) 		146.3
(0.3) 		106.1
(-2.4) 		136.5
(-0.3) 		185.1
(3) 		97.8
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 28.7
(3)
P 		25.6
(2.2)
P 		25.6
(2.2)
P 		4.9
(-3)
A 		24
B 25.9
(0.6)
P 		37.3
(3)
P 		30.4
(1.5)
P 		9.1
(-3)
A 		28
C 34.6
(1.7)
A 		35
(1.7)
P 		43.1
(3)
P 		4.8
(-3)
A 		38
avr 29.7
(2.3) 		32.6
(2.9) 		33
(3) 		6.3
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 21.7
(-2.5)
M 		70.5
(3)
P 		17.4
(-3)
P 		33.4
(-1.2)
P 		51.4
(0.8)
P 		32.3
(-1.3)
P 		53
B 59
(0.7)
P 		47.3
(-0.5)
P 		23.1
(-3)
P 		37.7
(-1.5)
P 		80.8
(3)
P 		29.6
(-2.3)
P 		58
C 47.1
(0.6)
P 		30
(-2.5)
P 		36.4
(-1.3)
P 		27.2
(-3)
P 		60.1
(3)
P 		27.3
(-3)
P 		33
avr 42.6
(-0.4) 		49.3
(0.7) 		25.6
(-3) 		32.8
(-1.9) 		64.1
(3) 		29.7
(-2.4) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185938_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13655
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.16 NCBI
Target Description Y51A2D.16 /REP_DB=WormBase Gene ID /WP=CE19212 /TR=Q9XXR0 /GB=CAA16403.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182406
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034268 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18592069:18616518:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182406 8/11 Cross Hyb Matching Probes None
Y51A2D.20 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18603922-18616518(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16402 Hypothetical protein Y51A2D.15 [Caenorhabditis elegans] ref|NP_507634.2| Y51A2D.15 [Caenorhabditis elegans] 0.0
blast T27075 hypothetical protein Y51A2D.16 - Caenorhabditis elegans 0.0
blast CAE67413 Hypothetical protein CBG12901 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185938_AT
cgttcttcacctctttatcataactaattttactaaaacaggtacaaatgaggacgtaga
tcacctgccgccaacatgctcctcatctgacgatcatgacgtcatttctccagactttag
tgcaaaaaatccgcttttaaggtctcgtaacgactttatgggcggttctgtgagaagtcc
gaggagatatggaaatgatcatgacgggcatatttatacatctccattcctgccgccacg
tgtgcccatccgcaactccccgatgacgtcatcactcaggtcccgcccaccgcccccgcc
ttacaaccgcagccccgcccacaaaattgagcaaaattcttcgttttttgagccaattgc
tcattcgacaccaaattcgtcaattttggaggaaagaagggttgtgggggaaggagaaaa
aagggaactagttagagataaggaagaacgcatcgacaagacgctcagctactacgaaaa
tgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTCTTCACCTCTTTATCATAACT 91 247 2940 Antisense
AATGAGGACGTAGATCACCTGCCGC 509 163 2986 Antisense
ACATGCTCCTCATCTGACGATCATG 458 107 3013 Antisense
CGATCATGACGTCATTTCTCCAGAC 417 247 3030 Antisense
GTCATTTCTCCAGACTTTAGTGCAA 326 467 3040 Antisense
GTCTCGTAACGACTTTATGGGCGGT 387 455 3081 Antisense
GGGCGGTTCTGTGAGAAGTCCGAGG 586 477 3099 Antisense
GACGGGCATATTTATACATCTCCAT 516 377 3142 Antisense
GCCAATTGCTCATTCGACACCAAAT 669 277 3291 Antisense
GAACGCATCGACAAGACGCTCAGCT 113 347 3385 Antisense
AGACGCTCAGCTACTACGAAAATGT 449 71 3398 Antisense
Sequence Source Affymetrix Proprietary Database