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[185937_at]

Description K04F10.7 /REP_DB=WormBase Gene ID /WP=CE18015 /TR=O44772 /GB=AAB96758.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 86      6grp_total > 48      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 714
1 2 3 4 range
A 1000.7
(0.2)
P 		836.4
(-1.2)
P 		621.2
(-3)
P 		1334.7
(3)
P 		714
B 1050.4
(0.6)
P 		791.8
(-1.9)
P 		669.8
(-3)
P 		1310.4
(3)
P 		641
C 1006
(0.5)
P 		820.8
(-3)
P 		828
(-2.9)
P 		1138.5
(3)
P 		318
avr 1019
(0.4) 		816.3
(-1.8) 		706.3
(-3) 		1261.2
(3) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 958.7
(0.4)
P 		1135.9
(3)
P 		734
(-3)
P 		897.8
(-0.6)
P 		826.6
(-1.6)
P 		1047.9
(1.7)
P 		402
B 912.7
(-0.6)
P 		850.1
(-1.6)
P 		867.9
(-1.3)
P 		771.1
(-3)
P 		777.1
(-2.9)
P 		1118.1
(3)
P 		347
C 1103.4
(3)
P 		900.1
(-0.1)
P 		1062.4
(2.4)
P 		712.5
(-3)
P 		1076.5
(2.6)
P 		949.5
(0.6)
P 		391
avr 991.6
(1.9) 		962
(1.1) 		888.1
(-0.7) 		793.8
(-3) 		893.4
(-0.6) 		1038.5
(3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 364.4
(3)
P 		181.6
(-2.4)
P 		162.4
(-3)
P 		195.4
(-2)
P 		202
B 335
(3)
P 		195.6
(-1.7)
P 		155.2
(-3)
P 		279.2
(1.1)
P 		180
C 333
(3)
P 		236
(-1.1)
P 		288.6
(1.1)
P 		192
(-3)
P 		141
avr 344.1
(3) 		204.4
(-2.9) 		202.1
(-3) 		222.2
(-2.2) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 176.7
(-2.6)
P 		404
(3)
P 		159.9
(-3)
P 		227.7
(-1.3)
P 		249.4
(-0.8)
P 		255.1
(-0.7)
P 		244
B 317.6
(0.2)
P 		283
(-0.8)
P 		210.7
(-2.8)
P 		204.2
(-3)
P 		315.7
(0.1)
P 		416.9
(3)
P 		213
C 409
(3)
P 		274.7
(-0)
P 		270.4
(-0.1)
P 		143.3
(-3)
P 		348.3
(1.6)
P 		317.9
(0.9)
P 		266
avr 301.1
(1.7) 		320.6
(2.6) 		213.7
(-2) 		191.7
(-3) 		304.5
(1.9) 		330
(3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185937_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2406
Sequence Type Exemplar sequence
Representative Public ID K04F10.7 NCBI
Target Description K04F10.7 /REP_DB=WormBase Gene ID /WP=CE18015 /TR=O44772 /GB=AAB96758.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059437 NCBI Caenorhabditis elegans K04F10.7 (K04F10.7) mRNA, complete cds. 11/11 None
K04F10.7 ENSEMBL cdna:known chromosome:CEL140:I:6374532:6376213:1 gene:K04F10.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042584 8/11 Cross Hyb Matching Probes None
GENEFINDER00000042589 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6374541-6375653(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F10.7
Entrez Gene 172335 Entrez gene
SwissProt O44772 EMBL-EBI
WormBase CE18015 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588991_AT similar to CG4452-PA, isoform A cfa
CANINE_2:CFA.16894.1.S1_AT similar to CG4452-PA, isoform A cfa
CANINE_2:CFAAFFX.7089.1.S1_S_AT similar to CG4452-PA, isoform A cfa
CHICKEN:GGA.17563.1.S1_S_AT similar to RIKEN cDNA 2810485I05 gga
CHICKEN:GGAAFFX.11035.1.S1_S_AT similar to RIKEN cDNA 2810485I05 gga
CHICKEN:GGAAFFX.25198.2.S1_AT similar to RIKEN cDNA 2810485I05 gga
MG-U74AV2:104193_AT RIKEN cDNA 2810485I05 gene mm
MU11KSUBA:AA170292_S_AT RIKEN cDNA 2810485I05 gene mm
MOE430A:1426985_S_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430A_2:1426985_S_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430_2:1426985_S_AT RIKEN cDNA 2810485I05 gene mm
MOE430A:1452268_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430A_2:1452268_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430_2:1452268_AT RIKEN cDNA 2810485I05 gene mm
MOE430A:1426986_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430A_2:1426986_AT RIKEN cDNA 2810485I05 gene mm
MOUSE430_2:1426986_AT RIKEN cDNA 2810485I05 gene mm
MU19KSUBC:TC38287_AT RIKEN cDNA 2810485I05 gene, mRNA (cDNA clone IMAGE:4951621) mm
MU19KSUBC:TC40612_AT RIKEN cDNA 2810485I05 gene, mRNA (cDNA clone IMAGE:4951621) mm
Protein Similarities
Method ID Description E-Value
blast AAB96758 Hypothetical protein K04F10.7 [Caenorhabditis elegans] ref|NP_491838.1| K04F10.7 [Caenorhabditis elegans] 1.0E-134
blast CAE67173 Hypothetical protein CBG12605 [Caenorhabditis briggsae] 3.0E-91
blast BAE26192.1 unnamed protein product [Mus musculus] 5.0E-24
Sequence
Target Sequence 
>C. ELEGANS:185937_AT
gtcgaaggtgctgcattgctctgtcgattgtgcattttacaagctcgtcatacgaatcaa
accgttgtagcaggaattccagtgccacctgagaagccagaaagatcaggagaaggatcc
tcaacagagcagagagatcgagatcatcgtcaacaccgtccaacatctcatcatcatcga
gatcataaagaccatcatcgacgagacgacaaacatcatcaccgcgattccaatcatcgt
catgctcacaaacggcgacaccaagaagagcccaataataacagtaacaacggaacatct
tcgtctggtggagctccacctctagttccaaacaatgaaaatggaaatggattccctcca
ttcggagatcgtgatcccggagagagtatggtgaagcaacagaaaatggaagacgagatt
cgccgactgaaaacattgctcgctgaaaaagatcaacttatttttgataaggataaacaa
atcagcaatttaaaagccgaccaatacaatctggataaaaagcatcgcgaacgtgtccaa
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAAGGTGCTGCATTGCTCTGTC 702 473 277 Antisense
GTGCATTTTACAAGCTCGTCATACG 696 479 306 Antisense
GAATTCCAGTGCCACCTGAGAAGCC 462 323 350 Antisense
GATCGAGATCATCGTCAACACCGTC 33 415 412 Antisense
ATCACCGCGATTCCAATCATCGTCA 340 29 494 Antisense
TCATCGTCATGCTCACAAACGGCGA 399 619 510 Antisense
ACAACGGAACATCTTCGTCTGGTGG 295 113 563 Antisense
CTCCACCTCTAGTTCCAAACAATGA 154 237 590 Antisense
GGATTCCCTCCATTCGGAGATCGTG 347 509 625 Antisense
CGCCGACTGAAAACATTGCTCGCTG 492 255 697 Antisense
AAAGCATCGCGAACGTGTCCAACAA 495 123 795 Antisense
Sequence Source Affymetrix Proprietary Database