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[185935_s_at]

Description K04F10.3 /REP_DB=WormBase Gene ID /WP=CE11726 /TR=O44769 /GB=AAB96749.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 92      6grp_total > 88      4grp_total > 06      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 251.8
(3)
P 		144.1
(-3)
P 		192.3
(-0.3)
P 		158.8
(-2.2)
P 		108
B 197.9
(-0.6)
P 		203.1
(-0.4)
P 		139.9
(-3)
P 		286.7
(3)
P 		147
C 173
(-1.4)
P 		120.9
(-3)
P 		289.1
(2.3)
P 		311.1
(3)
P 		190
avr 207.6
(0.2) 		156
(-3) 		207.1
(0.2) 		252.2
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 441
1 2 3 4 5 6 range
A 234.6
(-3)
P 		254.8
(-2.6)
P 		366.3
(-0.7)
P 		292.4
(-2)
P 		446.5
(0.8)
P 		570.9
(3)
P 		336
B 216.1
(-2.9)
P 		209
(-3)
P 		281.4
(-2)
P 		237.6
(-2.6)
P 		494.4
(1.1)
P 		624
(3)
P 		415
C 279.2
(-2.4)
P 		238
(-3)
P 		251.2
(-2.8)
P 		257.5
(-2.7)
P 		433.5
(-0.2)
P 		650.4
(3)
P 		412
avr 243.3
(-2.9) 		233.9
(-3) 		299.6
(-2) 		262.5
(-2.5) 		458.1
(0.5) 		615.1
(3) 		381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 91.7
(3)
P 		31.3
(-2.3)
P 		50.3
(-0.6)
P 		23.2
(-3)
P 		69
B 63.1
(3)
P 		50.2
(0.5)
P 		32.4
(-3)
P 		61.1
(2.6)
P 		31
C 57.3
(-1)
P 		34.8
(-3)
P 		100.8
(3)
P 		52.5
(-1.4)
P 		66
avr 70.7
(3) 		38.8
(-3) 		61.2
(1.2) 		45.6
(-1.7) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 43.2
(-3)
P 		90.6
(-0)
P 		79.8
(-0.7)
P 		74.2
(-1.1)
P 		134.7
(2.7)
P 		139
(3)
P 		96
B 75.2
(-2.6)
P 		69.6
(-2.8)
P 		68.3
(-2.8)
P 		62.9
(-3)
P 		200.9
(1.9)
P 		232.7
(3)
P 		170
C 103.5
(-1.1)
P 		72.6
(-2.2)
P 		63.9
(-2.6)
P 		51.8
(-3)
P 		140.3
(0.2)
P 		217.7
(3)
P 		166
avr 74
(-2.5) 		77.6
(-2.3) 		70.7
(-2.7) 		63
(-3) 		158.6
(1.3) 		196.5
(3) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185935_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2082
Sequence Type Exemplar sequence
Representative Public ID K04F10.3 NCBI
Target Description K04F10.3 /REP_DB=WormBase Gene ID /WP=CE11726 /TR=O44769 /GB=AAB96749.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059434(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059434 NCBI Caenorhabditis elegans K04F10.3 (K04F10.3) mRNA, complete cds. 10/11 None
K04F10.3 ENSEMBL cdna:known chromosome:CEL140:I:6366810:6368592:1 gene:K04F10.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027822 7/11 Cross Hyb Matching Probes None
GENEFINDER00000027827 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6366738-6368222(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F10.3
Entrez Gene 172334 Entrez gene
SwissProt O44769 EMBL-EBI
WormBase CE28586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96749 Hypothetical protein K04F10.3 [Caenorhabditis elegans] ref|NP_491835.1| K04F10.3 [Caenorhabditis elegans] 1.0E-144
blast CAE67169 Hypothetical protein CBG12599 [Caenorhabditis briggsae] 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:185935_S_AT
gcggatggacgagtttgtttggttaaaaattcttcaaacgacacgagccgccaccaagag
ttgattcttctacaaaaagacacccatgagcttcgatgccttcgcgaatatttgatgtta
gctcttgaagcaattatgcacaatcatcggcagatgatggtcaaacatgttcagaacgtc
agagaaaggccaagacaagtttctcaagcagctatagataacgcaatagtctcaagcgct
tttgggctttttattgaggctttttattcatttttgtttcaggaaaaagccaacacacgc
attattgacgaatttgctcagatgacactcttcgtcgatcagtccattgctcgcgaagaa
attcggtcggaaaacagacgaaaattaaagaaaaccattgaaattgagacttttttgatg
agaatgatgctcgaaatggaagatattcgggaagcaaatgtgaaagatttggtgtcatta
tggcgccattttttgactctagttactagttttttgtccattcataagtttccagtaatt
tttttttcgaaaatttacaaatggagtcatcaacgttctgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGATGGACGAGTTTGTTTGGTTA 547 291 298 Antisense
AAAAGACACCCATGAGCTTCGATGC 4 133 372 Antisense
TGAGCTTCGATGCCTTCGCGAATAT 494 567 384 Antisense
GAAGCAATTATGCACAATCATCGGC 349 341 424 Antisense
GGCCAAGACAAGTTTCTCAAGCAGC 450 543 485 Antisense
AACGCAATAGTCTCAAGCGCTTTTG 317 145 517 Antisense
GCGCTTTTGGGCTTTTTATTGAGGC 423 287 533 Antisense
AAGCCAACACACGCATTATTGACGA 348 149 584 Antisense
GACGAATTTGCTCAGATGACACTCT 636 379 604 Antisense
AGATGACACTCTTCGTCGATCAGTC 603 67 617 Antisense
AATGGAGTCATCAACGTTCTGCAAA 325 163 857 Antisense
Sequence Source Affymetrix Proprietary Database