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[185934_s_at]

Description C02E11.1 /REP_DB=WormBase Gene ID /WP=CE17363 /TR=Q9UAN9 /GB=AAC69200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 12      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 22      6grp_total > 23      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1638
1 2 3 4 range
A 2247.2
(0.9)
P
2187.2
(0.7)
P
2796.2
(3)
P
1195
(-3)
P
1601
B 1828.3
(-0.9)
P
2601
(3)
P
2403.8
(2)
P
1400.9
(-3)
P
1200
C 2072.2
(0.4)
P
2769.5
(3)
P
2593.1
(2.3)
P
1158
(-3)
P
1612
avr 2049.2
(0.6)
2519.2
(2.7)
2597.7
(3)
1251.3
(-3)
1346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1031
1 2 3 4 5 6 range
A 1813.5
(2.9)
P
1817.9
(3)
P
1664.5
(0.9)
P
1506.3
(-1.4)
P
1503.2
(-1.4)
P
1388.6
(-3)
P
429
B 2178.9
(3)
P
1937.6
(1.6)
P
2026.6
(2.1)
P
1665.1
(0)
P
1298.2
(-2.1)
P
1148.2
(-3)
P
1031
C 2159.5
(3)
P
1948.8
(1.6)
P
1945
(1.6)
P
1711.5
(0)
P
1433
(-1.9)
P
1263.5
(-3)
P
896
avr 2050.6
(3)
1901.4
(1.9)
1878.7
(1.7)
1627.6
(-0.2)
1411.5
(-1.9)
1266.8
(-3)
784
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 729
1 2 3 4 range
A 818.2
(3)
P
474.8
(-0.2)
P
731
(2.2)
P
174.9
(-3)
P
643
B 583
(2)
P
642.4
(3)
P
557
(1.5)
P
298.5
(-3)
P
344
C 686
(1.2)
P
796.2
(2.1)
P
903.8
(3)
P
195.3
(-3)
P
709
avr 695.7
(2.6)
637.8
(1.9)
730.6
(3)
222.9
(-3)
508

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 466
1 2 3 4 5 6 range
A 334.3
(-3)
P
646.5
(3)
P
362.5
(-2.5)
P
382
(-2.1)
P
453.6
(-0.7)
P
338.1
(-2.9)
P
312
B 758.1
(3)
P
644.9
(0.9)
P
492.1
(-1.8)
P
441
(-2.8)
P
527.4
(-1.2)
P
428.2
(-3)
P
330
C 800.4
(3)
P
594.6
(0.3)
P
495
(-1)
P
344.2
(-3)
P
463.7
(-1.4)
P
423
(-2)
P
456
avr 630.9
(3)
628.7
(2.9)
449.9
(-1.5)
389.1
(-3)
481.6
(-0.7)
396.4
(-2.8)
242
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15140
Sequence Type Exemplar sequence
Representative Public ID C02E11.1 NCBI
Target Description C02E11.1 /REP_DB=WormBase Gene ID /WP=CE17363 /TR=Q9UAN9 /GB=AAC69200.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070966(11), NM_182391(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_070966 NCBI Caenorhabditis elegans C02E11.1a (C02E11.1) mRNA, complete cds. 11/11 None
NM_182391 NCBI Caenorhabditis elegans C02E11.1b (C02E11.1) mRNA, complete cds. 11/11 None
C02E11.1a.1 ENSEMBL cdna:known chromosome:CEL140:V:1042522:1048412:-1 gene:C02E11.1 11/11 None
C02E11.1a.2 ENSEMBL cdna:known chromosome:CEL140:V:1042522:1048410:-1 gene:C02E11.1 11/11 None
C02E11.1b ENSEMBL cdna:known chromosome:CEL140:V:1042783:1048407:-1 gene:C02E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1042782-1048209(-) 100.0 100.0
Public Domain and Genome References
Ensembl C02E11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69200 Hypothetical protein C02E11.1a [Caenorhabditis elegans] ref|NP_503367.1| C02E11.1a [Caenorhabditis elegans] 0.0
blast AAN60536 Hypothetical protein C02E11.1b [Caenorhabditis elegans] ref|NP_872191.1| C02E11.1b [Caenorhabditis elegans] 0.0
blast CAE71048 Hypothetical protein CBG17890 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503367.1 1 1068-1090
NP_872191.1 1 1070-1092
C02E11.1a.1 1 1068-1090
C02E11.1a.2 1 1068-1090
C02E11.1b 1 1070-1092
Sequence
Target Sequence
>C. ELEGANS:185934_S_AT
gaagatggtacctaccgtatccgtgggcttctcccggattgtgaataccaagtgcatgct
aaatcctatgccgatggatctccagctccacacagcttcccacgaagcttcaccgtgtcg
atgacagcggaggatgtgaagggactcgagttcatggccacaatcaccgctaagactacc
gacattgctgtggaaatcggaatggacacgctgccagaaatccagtcggttcgagttgtg
atcaccaagaacaacaatgatcatgtccaagtggcgagcgtcgttgctccacaacatctt
cattatctcgtgaatcttccaagagatggagttgaatatgcgattcgtgttgaagctgag
aaacctccacaggcattcgccgccaaaactgtccgagttgtggctgatcaagcgatgaag
gtcgcccgtgtccctctgacgtcatcgaagcgagccaatgacgtggatatcagcgttgga
acattcctctcattgc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GAAGATGGTACCTACCGTATCCGTG 533 335 2608 Antisense
GGGCTTCTCCCGGATTGTGAATACC 578 493 2632 Antisense
GAAGCTTCACCGTGTCGATGACAGC 631 341 2711 Antisense
CACCGCTAAGACTACCGACATTGCT 336 201 2772 Antisense
CTGCCAGAAATCCAGTCGGTTCGAG 531 235 2818 Antisense
TCCAAGTGGCGAGCGTCGTTGCTCC 329 585 2873 Antisense
TCGTTGCTCCACAACATCTTCATTA 104 605 2888 Antisense
CTGAGAAACCTCCACAGGCATTCGC 337 239 2963 Antisense
CAAGCGATGAAGGTCGCCCGTGTCC 645 185 3016 Antisense
TCCCTCTGACGTCATCGAAGCGAGC 455 597 3038 Antisense
AGCGTTGGAACATTCCTCTCATTGC 611 81 3079 Antisense
Sequence Source Affymetrix Proprietary Database