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[185933_at]

Description F49E10.2 /REP_DB=WormBase Gene ID /WP=CE07263 /TR=Q20599 /GB=AAC69106.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 1.8
(-3)
A 		242.1
(3)
A 		66.6
(-1.4)
A 		12.2
(-2.7)
A 		240
B 2.4
(-3)
A 		237.6
(3)
A 		223.2
(2.6)
A 		2.8
(-3)
A 		235
C 8.3
(-2.9)
A 		224.4
(3)
A 		188.5
(2)
A 		4.7
(-3)
A 		220
avr 4.2
(-3) 		234.7
(3) 		159.4
(1) 		6.6
(-2.9) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 10.5
(-2.8)
A 		208
(3)
M 		74.1
(-0.9)
A 		86.4
(-0.6)
A 		56.8
(-1.4)
A 		3.4
(-3)
A 		205
B 25.9
(-2.6)
A 		268.5
(3)
P 		80.9
(-1.3)
A 		140.5
(0)
M 		76.5
(-1.4)
A 		8.3
(-3)
A 		260
C 4.7
(-2.9)
A 		146.4
(3)
P 		54.4
(-0.8)
A 		64.7
(-0.4)
A 		139.1
(2.7)
A 		2.4
(-3)
A 		144
avr 13.7
(-2.7) 		207.6
(3) 		69.8
(-1.1) 		97.2
(-0.3) 		90.8
(-0.5) 		4.7
(-3) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 0.7
(-3)
A 		52.6
(3)
A 		17.4
(-1.1)
A 		1.8
(-2.9)
A 		52
B 0.8
(-3)
A 		58.7
(3)
A 		51.7
(2.3)
A 		0.6
(-3)
A 		58
C 2.8
(-2.8)
A 		64.5
(2.9)
A 		65.7
(3)
A 		0.8
(-3)
A 		65
avr 1.4
(-3) 		58.6
(3) 		44.9
(1.6) 		1.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 1.9
(-2.9)
A 		74
(3)
M 		16.1
(-1.7)
A 		21.9
(-1.3)
A 		17.2
(-1.7)
A 		0.8
(-3)
A 		73
B 9
(-2.6)
A 		89.4
(3)
P 		19.6
(-1.9)
A 		37.2
(-0.6)
M 		31.1
(-1.1)
A 		3.1
(-3)
A 		86
C 1.7
(-2.9)
A 		44.7
(3)
P 		13.8
(-1.2)
A 		13
(-1.3)
A 		45
(3)
A 		0.8
(-3)
A 		44
avr 4.2
(-2.8) 		69.4
(3) 		16.5
(-1.7) 		24
(-1) 		31.1
(-0.4) 		1.6
(-3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16453
Sequence Type Exemplar sequence
Representative Public ID F49E10.2 NCBI
Target Description F49E10.2 /REP_DB=WormBase Gene ID /WP=CE07263 /TR=Q20599 /GB=AAC69106.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076586(11), NM_076585(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076586 NCBI Caenorhabditis elegans F49E10.2a (F49E10.2) mRNA, complete cds. 11/11 None
NM_076585 NCBI Caenorhabditis elegans F49E10.2b (F49E10.2) mRNA, complete cds. 11/11 None
SNAP00000004447 ENSEMBL cdna:SNAP chromosome:CEL140:X:5890415:5894378:1 11/11 None
GENEFINDER00000004451 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5890415:5894378:1 11/11 None
F49E10.2a ENSEMBL cdna:known chromosome:CEL140:X:5890364:5894715:1 gene:F49E10.2 11/11 None
F49E10.2b ENSEMBL cdna:known chromosome:CEL140:X:5890415:5894701:1 gene:F49E10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5890414-5893856(+) 93.93 100.0
Public Domain and Genome References
Ensembl F49E10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL06020 Hypothetical protein F49E10.2b [Caenorhabditis elegans] ref|NP_508986.1| F49E10.2b [Caenorhabditis elegans] 0.0
blast AAC69106 Hypothetical protein F49E10.2a [Caenorhabditis elegans] ref|NP_508987.1| F49E10.2a [Caenorhabditis elegans] 0.0
blast CAE68816 Hypothetical protein CBG14773 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004294 EMBL-EBI Retinal pigment epithelial membrane protein 2.1E-6
Pfam IPR004294 EMBL-EBI Retinal pigment epithelial membrane protein 2.2E-9
Sequence
Target Sequence 
>C. ELEGANS:185933_AT
aaccaagcacaactacaactgtcccgagcacaactcccacatcaaccaccaccacgacaa
caactactccaaaaccaacaactagtacatccacgtccacatcaacgacgacaacaacaa
cgacctccacaacagccactacaactcctcaaccgacaaccacaacgacatcagagaagc
ctgttacgttgacaacacaaacatggactgctccaccaactactactgtgaagagaacaa
cgccacaaactgttccaactacaactccaaaaattccacgttggtggccactagctggtt
ctggaagcactgaacaaccatggtggcaaaaggtacaaactggtcagaacactcttccac
cactttttccagtttcaaaaagagtggaggaaaaagtagagaaagtttcggcaaagccaa
atgagagcgacaacaaaatccccgaacaaaagcctgtgacggctactggatccatggatg
aaatctacgaacaaacgcttggagcactgtgctcatggcttccaaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCAAGCACAACTACAACTGTCCC 98 149 1799 Antisense
AACCAACAACTAGTACATCCACGTC 239 147 1871 Antisense
TACATCCACGTCCACATCAACGACG 520 643 1884 Antisense
GACAACACAAACATGGACTGCTCCA 615 365 1989 Antisense
CAAACTGTTCCAACTACAACTCCAA 555 191 2044 Antisense
AATTCCACGTTGGTGGCCACTAGCT 384 177 2070 Antisense
GGCCACTAGCTGGTTCTGGAAGCAC 9 543 2084 Antisense
GAGCGACAACAAAATCCCCGAACAA 131 387 2223 Antisense
CCTGTGACGGCTACTGGATCCATGG 116 267 2251 Antisense
AACAAACGCTTGGAGCACTGTGCTC 549 133 2288 Antisense
CACTGTGCTCATGGCTTCCAAAAGT 86 199 2303 Antisense
Sequence Source Affymetrix Proprietary Database