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[185932_at]

Description Y59C2A.2 /REP_DB=WormBase Gene ID /WP=CE20330 /TR=Q9TZC7 /GB=AAC68742.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 48.4
(-2.9)
A 		46.9
(-3)
A 		72.1
(-1.3)
A 		138.4
(3)
A 		92
B 29.3
(-3)
A 		31.4
(-2.8)
A 		52.8
(-1.2)
A 		107.1
(3)
A 		78
C 85.7
(1.8)
A 		101.6
(3)
A 		55.5
(-0.4)
A 		19.7
(-3)
A 		82
avr 54.5
(-3) 		60
(-2) 		60.1
(-2) 		88.4
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 74
(2.1)
A 		55.7
(-2.1)
A 		51.6
(-3)
A 		56
(-2)
A 		55.7
(-2.1)
A 		78
(3)
A 		26
B 27.1
(-3)
A 		50.5
(-1.3)
A 		109.7
(3)
A 		47.2
(-1.5)
A 		82.4
(1)
A 		56.3
(-0.9)
A 		83
C 10.2
(-2.7)
A 		7.2
(-3)
A 		48.3
(1.3)
A 		61.3
(2.7)
A 		64.1
(3)
A 		40.6
(0.5)
A 		57
avr 37.1
(-3) 		37.8
(-2.9) 		69.9
(3) 		54.8
(0.2) 		67.4
(2.5) 		58.3
(0.9) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 17.6
(1.4)
A 		10.2
(-3)
A 		18.8
(2.1)
A 		20.3
(3)
A 		10
B 9.3
(-2.4)
A 		7.7
(-3)
A 		12.2
(-1.2)
A 		22.8
(3)
A 		15
C 28.4
(2.8)
A 		29.2
(3)
A 		19.3
(0.7)
A 		3.3
(-3)
A 		26
avr 18.4
(3) 		15.7
(-2.6) 		16.8
(-0.3) 		15.5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.6
(-1.3)
A 		19.8
(3)
A 		11.2
(-3)
A 		14.2
(-0.9)
A 		16.8
(0.9)
A 		19
(2.4)
A 		9
B 9.4
(-3)
A 		16.8
(-1.2)
A 		26.6
(1.3)
A 		12.5
(-2.2)
A 		33.5
(3)
A 		21
(-0.1)
A 		24
C 3.8
(-2.5)
A 		2.2
(-3)
A 		12.3
(0.3)
A 		12.3
(0.3)
A 		20.7
(3)
A 		13.6
(0.7)
A 		19
avr 8.9
(-3) 		12.9
(-1.4) 		16.7
(0.2) 		13
(-1.3) 		23.7
(3) 		17.9
(0.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5047
Sequence Type Exemplar sequence
Representative Public ID Y59C2A.2 NCBI
Target Description Y59C2A.2 /REP_DB=WormBase Gene ID /WP=CE20330 /TR=Q9TZC7 /GB=AAC68742.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061811(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061811 NCBI Caenorhabditis elegans Y59C2A.2 (Y59C2A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000003206 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2200474:2205939:-1 11/11 None
Y59C2A.2 ENSEMBL cdna:known chromosome:CEL140:II:2200759:2204130:-1 gene:Y59C2A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003201 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2200757-2204112(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59C2A.2
Entrez Gene 173576 Entrez gene
SwissProt Q9TZC7 EMBL-EBI
WormBase CE20330 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603494_AT similar to Membralin cfa
CANINE_2:CFAAFFX.30042.1.S1_S_AT similar to Membralin cfa
HU35KSUBA:RC_AA256180_AT chromosome 19 open reading frame 6 hs
HU35KSUBA:AA461282_S_AT chromosome 19 open reading frame 6 hs
U133_X3P:HS.280666.3.S1_3P_AT chromosome 19 open reading frame 6 hs
U133_X3P:HS.280666.1.S1_3P_S_AT chromosome 19 open reading frame 6 hs
U133_X3P:HS.280666.0.S1_3P_A_AT chromosome 19 open reading frame 6 hs
HG-U133A_2:212574_X_AT chromosome 19 open reading frame 6 hs
HG-U133_PLUS_2:212574_X_AT chromosome 19 open reading frame 6 hs
HG-U133A:212574_X_AT chromosome 19 open reading frame 6 hs
HG-U133A_2:212575_AT chromosome 19 open reading frame 6 hs
HG-U133_PLUS_2:212575_AT chromosome 19 open reading frame 6 hs
HG-U133A:212575_AT chromosome 19 open reading frame 6 hs
HG-U133A_2:213986_S_AT chromosome 19 open reading frame 6 hs
HG-U133_PLUS_2:213986_S_AT chromosome 19 open reading frame 6 hs
HG-U133A:213986_S_AT chromosome 19 open reading frame 6 hs
HG-U133_PLUS_2:225247_AT chromosome 19 open reading frame 6 hs
HG-U133B:225247_AT chromosome 19 open reading frame 6 hs
HG-U95AV2:41291_AT chromosome 19 open reading frame 6 hs
HG-U133A_2:213985_S_AT Chromosome 19 open reading frame 6 hs
HG-U133_PLUS_2:213985_S_AT Chromosome 19 open reading frame 6 hs
HG-U133A:213985_S_AT Chromosome 19 open reading frame 6 hs
HG-U133_PLUS_2:230089_S_AT Chromosome 19 open reading frame 6 hs
HG-U133B:230089_S_AT Chromosome 19 open reading frame 6 hs
HU35KSUBA:RC_AA258336_AT Chromosome 19 open reading frame 6 hs
U133_X3P:230089_3P_S_AT Chromosome 19 open reading frame 6 hs
U133_X3P:HS.280666.0.A1_3P_A_AT Chromosome 19 open reading frame 6 hs
U133_X3P:HS.280666.2.A1_3P_AT Chromosome 19 open reading frame 6 hs
U133_X3P:HS.280666.2.A1_3P_X_AT Chromosome 19 open reading frame 6 hs
MU11KSUBA:AA674622_S_AT open reading frame 61 mm
MG-U74AV2:96837_AT open reading frame 61 mm
MG-U74BV2:112353_AT open reading frame 61 mm
MOE430A:1427109_AT open reading frame 61 mm
MOUSE430A_2:1427109_AT open reading frame 61 mm
MOUSE430_2:1427109_AT open reading frame 61 mm
MU19KSUBA:TC18511_S_AT Open reading frame 61, mRNA (cDNA clone IMAGE:3487794) mm
MU19KSUBB:TC31482_AT Open reading frame 61, mRNA (cDNA clone IMAGE:3487794) mm
MU19KSUBB:TC31483_AT Open reading frame 61, mRNA (cDNA clone IMAGE:3487794) mm
MU19KSUBC:TC40020_AT Open reading frame 61, mRNA (cDNA clone IMAGE:3487794) mm
RG-U34A:RC_AA800033_AT membralin (predicted) rn
RG-U34B:RC_AA925063_AT membralin (predicted) rn
RAE230A:1376303_A_AT membralin (predicted) rn
RAT230_2:1376303_A_AT membralin (predicted) rn
RAE230A:1388905_AT membralin (predicted) rn
RAT230_2:1388905_AT membralin (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC68742 Hypothetical protein Y59C2A.2 [Caenorhabditis elegans] ref|NP_494212.1| Y59C2A.2 [Caenorhabditis elegans] 0.0
blast CAE73871 Hypothetical protein CBG21461 [Caenorhabditis briggsae] 1.0E-100
blast CAE73871 Hypothetical protein CBG21461 [Caenorhabditis briggsae] 1.0E-97
blast XP_418222 PREDICTED: similar to ATP-binding cassette, sub-family A, member 1 (ATP-binding cassette transporter 1) (ATP-binding cassette 1) (ABC-1) [Gallus gallus] 3.0E-44
blast AAH72201 MGC81115 protein [Xenopus laevis] 9.0E-42
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494212.1 2 97-119,376-398
Y59C2A.2 2 97-119,376-398
GENEFINDER00000003206 2 213-235,490-512
Sequence
Target Sequence 
>C. ELEGANS:185932_AT
gaagctcatgccgcctattttgagcatgttaaaggccgcccagagccccaagagtacgaa
tatctctaccgagttgaatacgcgatgctttacggtgtgctccggctcccgccggatttc
agggaagaacatggaattcctactacttggattcggatcgactcaaaatcgcaatgcttc
ggtgatcaattggcccgtctaatgatgcgactattcgttggatacgaggatacagtaatc
gcagctctccgagcacaagccatcaatctttcactcgttcacccggaaactcattcgatg
ggatatctacacaatttgcagacacacgatcattatcattttgtggcgaactcgttggga
aaagccagttatttgactgccggagccttgatgatcatttttacattcgccatctcgatg
ctcctccgcttctcgcatcaccaaattttcgtgttcattatcgatttgctccacatgttc
gagctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCATGCCGCCTATTTTGAGC 240 343 775 Antisense
TTGAGCATGTTAAAGGCCGCCCAGA 261 703 794 Antisense
ATACGCGATGCTTTACGGTGTGCTC 609 23 852 Antisense
GCTTCGGTGATCAATTGGCCCGTCT 258 303 950 Antisense
GGATACAGTAATCGCAGCTCTCCGA 184 511 1002 Antisense
CACAAGCCATCAATCTTTCACTCGT 182 195 1028 Antisense
GTTCACCCGGAAACTCATTCGATGG 197 443 1051 Antisense
GACTGCCGGAGCCTTGATGATCATT 261 375 1149 Antisense
TTTTACATTCGCCATCTCGATGCTC 40 677 1173 Antisense
GCTTCTCGCATCACCAAATTTTCGT 654 305 1202 Antisense
GATTTGCTCCACATGTTCGAGCTCC 578 427 1237 Antisense
Sequence Source Affymetrix Proprietary Database