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[185931_at]

Description Y39D8B.2 /REP_DB=WormBase Gene ID /WP=CE24238 /TR=Q9N513 /GB=AAF60532.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.2
(3)
A 		3.3
(-3)
A 		10.9
(-1)
A 		4.6
(-2.7)
A 		23
B 5.1
(-3)
A 		5.4
(-2)
A 		6.7
(2.3)
A 		6.9
(3)
A 		2
C 4.4
(-1.9)
A 		9.1
(3)
A 		5.6
(-0.6)
A 		3.3
(-3)
A 		6
avr 11.9
(3) 		5.9
(-2.1) 		7.7
(-0.6) 		4.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 7
(-0.5)
A 		6.8
(-0.7)
A 		11.5
(3)
A 		3.8
(-3)
A 		7.8
(0.1)
A 		3.8
(-3)
A 		8
B 11.5
(-0.6)
A 		5.6
(-2.1)
A 		18.5
(1.1)
A 		26.1
(3)
A 		9
(-1.2)
A 		1.8
(-3)
A 		24
C 8.9
(-2)
A 		5.9
(-2.4)
A 		4.2
(-2.7)
A 		41.4
(3)
A 		11.1
(-1.6)
A 		2.1
(-3)
A 		39
avr 9.1
(-1.2) 		6.1
(-2) 		11.4
(-0.5) 		23.8
(3) 		9.3
(-1.1) 		2.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.6
(3)
A 		0.7
(-3)
A 		2.9
(-1.5)
A 		0.7
(-3)
A 		9
B 1.6
(3)
A 		1.3
(-3)
A 		1.5
(1)
A 		1.5
(1)
A 		0
C 1.5
(-0.3)
A 		2.6
(3)
A 		2
(1.2)
A 		0.6
(-3)
A 		2
avr 4.2
(3) 		1.5
(-1.9) 		2.1
(-0.8) 		0.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.3
(-1.5)
A 		2.4
(2.6)
A 		2.5
(3)
A 		1
(-2.6)
A 		2.3
(2.3)
A 		0.9
(-3)
A 		2
B 4
(0.2)
A 		1.9
(-1.8)
A 		4.5
(0.7)
A 		6.9
(3)
A 		3.7
(-0.1)
A 		0.7
(-3)
A 		6
C 3.3
(-0.9)
A 		1.8
(-2.1)
A 		1.1
(-2.7)
A 		8.3
(3)
A 		3.6
(-0.7)
A 		0.7
(-3)
A 		8
avr 2.9
(-0.3) 		2
(-1.4) 		2.7
(-0.5) 		5.4
(3) 		3.2
(0.1) 		0.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14812
Sequence Type Exemplar sequence
Representative Public ID Y39D8B.2 NCBI
Target Description Y39D8B.2 /REP_DB=WormBase Gene ID /WP=CE24238 /TR=Q9N513 /GB=AAF60532.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070780 NCBI Caenorhabditis elegans Y39D8B.1 (Y39D8B.1) mRNA, complete cds. 11/11 None
SNAP00000018380 ENSEMBL cdna:SNAP chromosome:CEL140:V:360822:375992:1 11/11 None
GENEFINDER00000018385 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:364779:374011:1 11/11 None
Y39D8B.1 ENSEMBL cdna:known chromosome:CEL140:V:364779:373084:1 gene:Y39D8B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:364778-367913(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39D8B.1
Entrez Gene 189750 Entrez gene
SwissProt Q60F74 EMBL-EBI
WormBase CE37681 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28322 Hypothetical protein Y39D8B.1 [Caenorhabditis elegans] ref|NP_503181.2| Y39D8B.1 [Caenorhabditis elegans] 0.0
blast CAE58270 Hypothetical protein CBG01376 [Caenorhabditis briggsae] 0.0
blast CAE58271 Hypothetical protein CBG01377 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR009292 EMBL-EBI Protein of unknown function DUF947 2.2E-93
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503181.2 4 672-694,701-723,743-765,772-794
Y39D8B.1 4 672-694,701-723,743-765,772-794
SNAP00000018380 4 1007-1029,1036-1058,1078-1100,1107-1129
GENEFINDER00000018385 8 672-694,701-723,743-765,772-794,1319-1341,1348-1370,1380-1402,1409-1431
Sequence
Target Sequence 
>C. ELEGANS:185931_AT
gaaagttgcactgctatcaccacagtttatgagcattctaccggatgaagtggcgaatga
tacggtatccctcttctccccctccatcctttcacttcacggagaaggtactgatttgga
gcgttcactttctctcaccaaggccttgaggctgatggaagacactggtcaggaggaatg
gatgaactttgtattagaagcttccggtgtaacagagacagttgaaaaaatgagaatcgc
cgaggaaaaagagcaagacgaggagagacggaaggattttgtggataaggatggaagacc
gatgtacttcacgaaggaaaatgtgaccgagatttacggagagtatgaggcaaccaagat
tgacttgatcaacggaatttacaagacaatgtccaaagatcagctcgacgcattaaactc
caccggctactccatcatggacgacaagcagctcgatatgctctacgggccaggatcacc
ctacaataattcagaggcactggataagttccgcgggattccgttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTTGCACTGCTATCACCACAG 9 361 1323 Antisense
GAATGATACGGTATCCCTCTTCTCC 639 331 1377 Antisense
CTCCATCCTTTCACTTCACGGAGAA 596 233 1404 Antisense
TGATTTGGAGCGTTCACTTTCTCTC 544 563 1434 Antisense
TTTCTCTCACCAAGGCCTTGAGGCT 669 669 1451 Antisense
GAAGCTTCCGGTGTAACAGAGACAG 22 341 1519 Antisense
ATGTCCAAAGATCAGCTCGACGCAT 673 47 1711 Antisense
CTCCATCATGGACGACAAGCAGCTC 340 235 1752 Antisense
AAGCAGCTCGATATGCTCTACGGGC 439 151 1768 Antisense
GGCCAGGATCACCCTACAATAATTC 477 541 1790 Antisense
GATAAGTTCCGCGGGATTCCGTTAG 95 423 1825 Antisense
Sequence Source Affymetrix Proprietary Database