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[185930_at]

Description Y57A10C.5 /REP_DB=WormBase Gene ID /WP=CE18417 /TR=O62490 /GB=CAA19547.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 0      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.1
(-1.7)
A 		4.3
(-3)
A 		7.1
(-0.9)
A 		12.4
(3)
A 		8
B 4
(-3)
A 		5.2
(-1.6)
A 		9
(3)
A 		4.2
(-2.8)
A 		5
C 4.2
(-3)
A 		4.7
(-2.5)
A 		6.4
(-0.8)
A 		10.3
(3)
A 		6
avr 4.8
(-2.9) 		4.7
(-3) 		7.5
(0.9) 		9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.7
(3)
A 		3.2
(-3)
A 		5
(1.3)
A 		4.1
(-0.8)
A 		5.3
(2)
A 		4.4
(-0.1)
A 		3
B 4.7
(-0.5)
A 		4
(-1.5)
A 		3
(-3)
A 		7
(3)
A 		4.8
(-0.3)
A 		4.5
(-0.8)
A 		4
C 3.8
(-1.5)
A 		4.4
(-0.8)
A 		2.6
(-3)
A 		7.5
(3)
A 		4.6
(-0.6)
A 		3.3
(-2.1)
A 		5
avr 4.7
(-0.3) 		3.9
(-2.1) 		3.5
(-3) 		6.2
(3) 		4.9
(0.1) 		4.1
(-1.7) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 2.2
(3)
A 		0.9
(-3)
A 		1.9
(1.6)
A 		1.8
(1.2)
A 		1
B 1.3
(-1)
A 		1.3
(-1)
A 		2.1
(3)
A 		0.9
(-3)
A 		1
C 1.4
(-2.3)
A 		1.3
(-3)
A 		2.2
(3)
A 		1.7
(-0.3)
A 		1
avr 1.6
(-0.3) 		1.2
(-3) 		2.1
(3) 		1.5
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.1
(-2)
A 		1.1
(-2)
A 		1.1
(-2)
A 		1
(-3)
A 		1.6
(3)
A 		1.1
(-2)
A 		1
B 1.6
(1.2)
A 		1.3
(-0.2)
A 		0.7
(-3)
A 		1.9
(2.5)
A 		2
(3)
A 		1.7
(1.6)
A 		1
C 1.4
(2.3)
A 		1.3
(1.5)
A 		0.7
(-3)
A 		1.5
(3)
A 		1.5
(3)
A 		1.1
(0)
A 		1
avr 1.4
(1) 		1.2
(-0.3) 		0.8
(-3) 		1.5
(1.7) 		1.7
(3) 		1.3
(0.3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3364
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.5 NCBI
Target Description Y57A10C.5 /REP_DB=WormBase Gene ID /WP=CE18417 /TR=O62490 /GB=CAA19547.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y57A10C.5 ENSEMBL cdna:pseudogene chromosome:CEL140:II:12421004:12422526:-1 gene:Y57A10C.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005460 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12421103-12422523(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y57A10C.5
Sequence
Target Sequence 
>C. ELEGANS:185930_AT
tttagtaccgctttttgtcgctggatttttgatatttcattttggattttcggtggtttt
tgtgtgccttgctattgtggcagagagggtcatagcttccatgttgatagacaactacga
gaaaagcaaataccacctaatacccataattctaacaatttcttatcaattttgctcgat
ttccatatccctggcactgatattcaataaggcggggctcataattttcaatggctcctg
gatgtttgcattttctatcggatcatttatgtacttctacatcaaaaaaatcaatacaaa
attgctgcgagaaatggagcatcctcaccggaagcgggtcttcacagtatctcaacgatt
ccaggttcgggaaaacctacgagcactggcgattgggaagcggctggtgttcacggtgct
cggcgccatgatatcctgtggatttggaattttagtgctactttatggcattgtaatacc
tttttcgattcatatcggcgaaaatgtatttttctgctaccccttaattgtgctaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAGTACCGCTTTTTGTCGCTGGA 645 673 372 Antisense
TGGTTTTTGTGTGCCTTGCTATTGT 694 551 425 Antisense
GAGAGGGTCATAGCTTCCATGTTGA 643 391 454 Antisense
GCAAATACCACCTAATACCCATAAT 458 317 497 Antisense
AATTTTGCTCGATTTCCATATCCCT 627 175 539 Antisense
GCGAGAAATGGAGCATCCTCACCGG 519 289 678 Antisense
GGAAGCGGGTCTTCACAGTATCTCA 456 531 701 Antisense
AAACCTACGAGCACTGGCGATTGGG 396 125 744 Antisense
TTGGGAAGCGGCTGGTGTTCACGGT 679 677 764 Antisense
TCGGCGCCATGATATCCTGTGGATT 571 607 791 Antisense
TGCTACCCCTTAATTGTGCTAACAG 524 579 886 Antisense
Sequence Source Affymetrix Proprietary Database