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[185929_at]

Description F45D11.1 /REP_DB=WormBase Gene ID /WP=CE23732 /TR=Q9N5T0 /GB=AAF39815.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      6grp_highest_nonorm > 71      6grp_total > 20      4grp_total > 50      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 81.2
(-3)
P 		236.2
(1.9)
P 		272.8
(3)
P 		82.1
(-3)
A 		192
B 141.5
(-0.7)
P 		335.3
(3)
P 		228.5
(0.9)
P 		22.9
(-3)
A 		312
C 110.4
(-1.7)
P 		304
(3)
P 		250
(1.7)
P 		59.4
(-3)
A 		245
avr 111
(-1.6) 		291.8
(3) 		250.4
(2) 		54.8
(-3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 250.4
(-1.2)
P 		711
(3)
P 		607.2
(2.1)
P 		313.5
(-0.6)
P 		175.3
(-1.9)
P 		51.7
(-3)
P 		659
B 136.8
(-2.1)
P 		686.7
(3)
P 		553.3
(1.8)
P 		286.6
(-0.7)
P 		124.1
(-2.2)
P 		38.1
(-3)
P 		649
C 159.9
(-2.2)
P 		750.6
(3)
P 		498.4
(0.8)
P 		335.5
(-0.6)
P 		95.3
(-2.7)
P 		66.6
(-3)
P 		684
avr 182.4
(-1.8) 		716.1
(3) 		553
(1.5) 		311.9
(-0.7) 		131.6
(-2.3) 		52.1
(-3) 		664
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 29.5
(-1.2)
P 		51.3
(1)
P 		71.3
(3)
P 		12
(-3)
A 		59
B 45.1
(0.1)
P 		82.8
(3)
P 		52.9
(0.7)
P 		4.9
(-3)
A 		78
C 36.5
(-0.9)
P 		87.4
(3)
P 		87.1
(3)
P 		10
(-3)
A 		77
avr 37
(-0.4) 		73.8
(3) 		70.4
(2.7) 		9
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 46.2
(-2.2)
P 		252.9
(3)
P 		132.2
(-0)
P 		79.5
(-1.3)
P 		52.9
(-2)
P 		12.6
(-3)
P 		240
B 47.6
(-2.1)
P 		228.6
(3)
P 		134.3
(0.4)
P 		75.9
(-1.3)
P 		50.4
(-2)
P 		14.2
(-3)
P 		214
C 59.3
(-1.9)
P 		229
(3)
P 		126.9
(0)
P 		67.5
(-1.7)
P 		30.8
(-2.8)
P 		22.3
(-3)
P 		207
avr 51
(-2.1) 		236.8
(3) 		131.1
(0.1) 		74.3
(-1.4) 		44.7
(-2.2) 		16.4
(-3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4923
Sequence Type Exemplar sequence
Representative Public ID F45D11.1 NCBI
Target Description F45D11.1 /REP_DB=WormBase Gene ID /WP=CE23732 /TR=Q9N5T0 /GB=AAF39815.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061488 NCBI Caenorhabditis elegans F45D11.1 (F45D11.1) mRNA, complete cds. 11/11 None
SNAP00000019567 ENSEMBL cdna:SNAP chromosome:CEL140:II:1022078:1023416:1 11/11 None
GENEFINDER00000019575 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1021540:1023416:1 11/11 None
F45D11.1.2 ENSEMBL cdna:known chromosome:CEL140:II:1021511:1023526:1 gene:F45D11.1 11/11 None
F45D11.1.1 ENSEMBL cdna:known chromosome:CEL140:II:1021511:1023526:1 gene:F45D11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1021538-1023415(+) 100.0 100.0
chrII:1057216-1059204(+) 91.16 91.16
Public Domain and Genome References
Gene Title
Ensembl F45D11.1
Entrez Gene 185779 Entrez gene
SwissProt Q9N5T0 EMBL-EBI
WormBase CE32665 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39822 Hypothetical protein F45D11.14 [Caenorhabditis elegans] ref|NP_493883.1| F45D11.14 [Caenorhabditis elegans] 0.0
blast AAF39810 Hypothetical protein F45D11.16 [Caenorhabditis elegans] gb|AAF39811.1| Hypothetical protein F45D11.15 [Caenorhabditis elegans] ref|NP_493885.1| F45D11.15 [Caenorhabditis elegans] ref|NP_493887.1| F45D11.16 [Caenorhabditis elegans] 0.0
blast AAB71027 Hypothetical protein K02E7.6 [Caenorhabditis elegans] ref|NP_493901.2| K02E7.6 [Caenorhabditis elegans] 1.0E-149
blast AAF39822 Hypothetical protein F45D11.14 [Caenorhabditis elegans] ref|NP_493883.1| F45D11.14 [Caenorhabditis elegans] 1.0E-136
blast AAF39810 Hypothetical protein F45D11.16 [Caenorhabditis elegans] gb|AAF39811.1| Hypothetical protein F45D11.15 [Caenorhabditis elegans] ref|NP_493885.1| F45D11.15 [Caenorhabditis elegans] ref|NP_493887.1| F45D11.16 [Caenorhabditis elegans] 1.0E-136
blast AAF39815 Hypothetical protein F45D11.1 [Caenorhabditis elegans] ref|NP_493889.2| F45D11.1 [Caenorhabditis elegans] 1.0E-106
blast AAF39815 Hypothetical protein F45D11.1 [Caenorhabditis elegans] ref|NP_493889.2| F45D11.1 [Caenorhabditis elegans] 1.0E-102
blast AAB71027 Hypothetical protein K02E7.6 [Caenorhabditis elegans] ref|NP_493901.2| K02E7.6 [Caenorhabditis elegans] 1.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.7E-91
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 3.6E-88
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 5.5E-35
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.2E-86
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 2.9E-41
Sequence
Target Sequence 
>C. ELEGANS:185929_AT
actactctacgctggtccaacaatgggagaagcattatttgaacgatagaccatactggc
aaaaactcaaaaatgacaacttctatatatgtgttttcgacagaaacgttcactgcgatt
atcacgcagtgaaacccgaaatggtgttcgtctcgacgaataacggaaagttcaacgtga
tcatttctcgtgcatttgagcacaatgagtcgacatgtttgcaatggtgggaaaaacttt
acgatatcaaggatcggaaggttaaagtaggaaacattttctactctttgacaattcata
tgaaagaattccttcaatcggctgtggtatcatatgcaaagaacgagttcaagggatgct
cgtacttcttggcgattacttcccaagatgtggctgtcagatggacgaaaaaaaatgagg
ctgctaactataagggtccaggattcttcaattgggatggagaactgatggtttacaatg
tccttaatgccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTCTACGCTGGTCCAACAATG 686 99 812 Antisense
GCGATTATCACGCAGTGAAACCCGA 670 289 926 Antisense
GAAATGGTGTTCGTCTCGACGAATA 554 361 949 Antisense
GGAAACATTTTCTACTCTTTGACAA 8 529 1081 Antisense
GAAAGAATTCCTTCAATCGGCTGTG 558 359 1113 Antisense
AATCGGCTGTGGTATCATATGCAAA 149 169 1127 Antisense
GATGCTCGTACTTCTTGGCGATTAC 504 413 1166 Antisense
GGCGATTACTTCCCAAGATGTGGCT 123 541 1182 Antisense
TGAGGCTGCTAACTATAAGGGTCCA 269 565 1227 Antisense
CTATAAGGGTCCAGGATTCTTCAAT 409 223 1239 Antisense
GGTTTACAATGTCCTTAATGCCAAG 91 507 1281 Antisense
Sequence Source Affymetrix Proprietary Database