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[185927_s_at]

Description R09E12.5 /REP_DB=WormBase Gene ID /WP=CE12650 /TR=O16257 /GB=AAG24173.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 11.2
(-2.5)
A 		3.5
(-3)
A 		6.9
(-2.8)
A 		102
(3)
M 		99
B 36.1
(1.6)
A 		1.8
(-3)
A 		44.1
(2.6)
A 		47
(3)
A 		45
C 19.5
(-2.6)
A 		23.3
(-2.5)
A 		7.6
(-3)
A 		185.5
(3)
P 		178
avr 22.3
(-2.2) 		9.5
(-3) 		19.5
(-2.4) 		111.5
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 4.4
(-2.8)
A 		1.4
(-3)
A 		82.9
(3)
P 		4.6
(-2.8)
A 		82.3
(3)
P 		61.3
(1.4)
P 		82
B 28.8
(-0.3)
A 		53.2
(2.1)
P 		29.6
(-0.2)
A 		2.1
(-3)
A 		61.2
(2.9)
P 		61.8
(3)
P 		60
C 15
(-3)
A 		50.7
(0.3)
P 		24.9
(-2.1)
A 		52.4
(0.4)
A 		80.7
(3)
P 		42
(-0.5)
P 		66
avr 16.1
(-3) 		35.1
(-1.1) 		45.8
(0) 		19.7
(-2.6) 		74.7
(3) 		55
(1) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 4.1
(-1.6)
A 		0.8
(-3)
A 		1.8
(-2.6)
A 		14.9
(3)
M 		14
B 11.5
(3)
A 		0.5
(-3)
A 		10.2
(2.3)
A 		10
(2.2)
A 		11
C 6.5
(-2.2)
A 		6.7
(-2.2)
A 		2.7
(-3)
A 		31.3
(3)
P 		29
avr 7.4
(-1.2) 		2.7
(-3) 		4.9
(-2.2) 		18.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		0.5
(-3)
A 		18.1
(1.3)
P 		1.2
(-2.8)
A 		24.8
(3)
P 		14.9
(0.6)
P 		24
B 10
(-0.7)
A 		17.7
(1.2)
P 		7.2
(-1.4)
A 		0.6
(-3)
A 		24.9
(3)
P 		23
(2.5)
P 		24
C 5.5
(-3)
A 		15.5
(-0.1)
P 		6.3
(-2.8)
A 		10.5
(-1.5)
A 		26.1
(3)
P 		14.1
(-0.5)
P 		21
avr 5.4
(-2.6) 		11.2
(-1) 		10.5
(-1.2) 		4.1
(-3) 		25.3
(3) 		17.3
(0.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185927_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14956
Sequence Type Exemplar sequence
Representative Public ID R09E12.5 NCBI
Target Description R09E12.5 /REP_DB=WormBase Gene ID /WP=CE12650 /TR=O16257 /GB=AAG24173.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070920(11), NM_061507(11), NM_071521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070920 NCBI Caenorhabditis elegans R09E12.5 (R09E12.5) mRNA, complete cds. 11/11 A 
NM_061507 NCBI Caenorhabditis elegans K02E7.2 (K02E7.2) mRNA, complete cds. 11/11 A 
NM_071521 NCBI Caenorhabditis elegans C17B7.7 (C17B7.7) mRNA, complete cds. 11/11 A 
SNAP00000001043 ENSEMBL cdna:SNAP chromosome:CEL140:II:14691256:14693024:1 11/11 None
GENEFINDER00000001045 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14691014:14693024:1 11/11 None
SNAP00000023031 ENSEMBL cdna:SNAP chromosome:CEL140:II:1079573:1083926:1 11/11 None
GENEFINDER00000023037 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1079331:1081332:1 11/11 None
SNAP00000014999 ENSEMBL cdna:SNAP chromosome:CEL140:IV:705443:707211:1 11/11 None
GENEFINDER00000015018 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:705201:707211:1 11/11 None
SNAP00000041679 ENSEMBL cdna:SNAP chromosome:CEL140:IV:511223:512991:1 11/11 None
GENEFINDER00000041687 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:510981:512991:1 11/11 None
SNAP00000015611 ENSEMBL cdna:SNAP chromosome:CEL140:V:769153:770912:1 11/11 None
GENEFINDER00000015617 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:768911:770912:1 11/11 None
SNAP00000020305 ENSEMBL cdna:SNAP chromosome:CEL140:V:3328482:3330250:1 11/11 None
GENEFINDER00000020320 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3328240:3330250:1 11/11 None
K02E7.2 ENSEMBL cdna:known chromosome:CEL140:II:1079573:1081332:1 gene:K02E7.2 11/11 A 
R09E12.5 ENSEMBL cdna:known chromosome:CEL140:V:769153:770912:1 gene:R09E12.5 11/11 A 
C17B7.7 ENSEMBL cdna:known chromosome:CEL140:V:3325278:3330250:1 gene:C17B7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title


Ensembl K02E7.2
R09E12.5
C17B7.7
Entrez Gene 178765 Entrez gene
186886 Entrez gene
187747 Entrez gene
SwissProt O45152 EMBL-EBI
O17259 EMBL-EBI
O16257 EMBL-EBI
WormBase CE16855 Wormbase
CE11624 Wormbase
CE12650 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24173 Hypothetical protein R09E12.5 [Caenorhabditis elegans] ref|NP_503321.1| R09E12.5 [Caenorhabditis elegans] 0.0
blast AAB71024 Hypothetical protein K02E7.2 [Caenorhabditis elegans] ref|NP_493908.1| K02E7.2 [Caenorhabditis elegans] 0.0
blast AAC04401 Hypothetical protein C17B7.7 [Caenorhabditis elegans] ref|NP_503922.1| C17B7.7 [Caenorhabditis elegans] 0.0
blast ABA03108 Hypothetical protein Y55F3C.6 [Caenorhabditis elegans] 0.0
blast AAG24174 Hypothetical protein R09E12.6 [Caenorhabditis elegans] ref|NP_503320.1| R09E12.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 4.5E-10
Sequence
Target Sequence 
>C. ELEGANS:185927_S_AT
tgaaccctaacgattttctgaaccacaaactgctggaagtttcgagtttggatcaaactg
tgtttatcaacgtcaatctcgtgttttcggcgctgagcattcaacatggctcggttagat
caattgtcaatgctatgtcaaatcactggattgactacctgattccgagagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACCCTAACGATTTTCTGAACCA 195 423 674 Antisense
ATTTTCTGAACCACAAACTGCTGGA 455 13 686 Antisense
GCTGGAAGTTTCGAGTTTGGATCAA 68 295 705 Antisense
AACTGTGTTTATCAACGTCAATCTC 687 141 729 Antisense
CAACGTCAATCTCGTGTTTTCGGCG 400 187 741 Antisense
GTGTTTTCGGCGCTGAGCATTCAAC 378 485 754 Antisense
GCATTCAACATGGCTCGGTTAGATC 557 307 770 Antisense
GGCTCGGTTAGATCAATTGTCAATG 506 539 781 Antisense
TGTCAATGCTATGTCAAATCACTGG 112 559 798 Antisense
CACTGGATTGACTACCTGATTCCGA 297 199 817 Antisense
GATTGACTACCTGATTCCGAGAGAG 449 433 822 Antisense
Sequence Source Affymetrix Proprietary Database