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[185926_at]

Description Y54G11A.1 /REP_DB=WormBase Gene ID /WP=CE22472 /TR=Q9XVZ7 /GB=CAA22455.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_total > 81      4grp_total > 26      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 63.6
(-3)
P 		91.5
(-1.6)
P 		104.2
(-0.9)
P 		180.7
(3)
P 		117
B 99.5
(-3)
P 		158.5
(3)
P 		129.6
(0.1)
P 		143
(1.4)
P 		59
C 106.6
(-1)
P 		135.1
(0.8)
P 		74
(-3)
P 		170.5
(3)
P 		97
avr 89.9
(-3) 		128.4
(0.1) 		102.6
(-2) 		164.7
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 79.4
(-1.9)
P 		96.7
(-0.1)
P 		69.4
(-3)
P 		73.5
(-2.6)
P 		125.5
(3)
P 		71.8
(-2.7)
P 		56
B 82.5
(-0.7)
P 		82.8
(-0.6)
P 		64.4
(-3)
P 		110.7
(3)
P 		82.4
(-0.7)
P 		67.9
(-2.5)
M 		46
C 44.9
(-3)
A 		95
(0.3)
P 		127.6
(2.5)
P 		135.6
(3)
P 		80.3
(-0.7)
P 		66.4
(-1.6)
P 		91
avr 68.9
(-3) 		91.5
(0.6) 		87.1
(-0.1) 		106.6
(3) 		96.1
(1.3) 		68.7
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 23.2
(-0.3)
P 		19.9
(-3)
P 		27.2
(3)
P 		26.4
(2.3)
P 		7
B 31.7
(-1.9)
P 		39.1
(3)
P 		30
(-3)
P 		30.5
(-2.7)
P 		9
C 35.3
(1.4)
P 		38.8
(3)
P 		25.8
(-3)
P 		28.8
(-1.6)
P 		13
avr 30.1
(-0.1) 		32.6
(3) 		27.7
(-3) 		28.6
(-1.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 14.6
(-3)
P 		34.4
(2.1)
P 		15.1
(-2.9)
P 		18.6
(-2)
P 		37.9
(3)
P 		17.5
(-2.3)
P 		23
B 28.7
(1.4)
P 		27.6
(1)
P 		15.6
(-3)
P 		29.3
(1.6)
P 		33.5
(3)
P 		25.3
(0.3)
M 		18
C 16.6
(-3)
A 		29
(1.7)
P 		32.5
(3)
P 		27.3
(1)
P 		26
(0.5)
P 		22.2
(-0.9)
P 		16
avr 20
(-3) 		30.3
(1.9) 		21.1
(-2.5) 		25.1
(-0.6) 		32.5
(3) 		21.7
(-2.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3742
Sequence Type Exemplar sequence
Representative Public ID Y54G11A.1 NCBI
Target Description Y54G11A.1 /REP_DB=WormBase Gene ID /WP=CE22472 /TR=Q9XVZ7 /GB=CAA22455.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064571 NCBI Caenorhabditis elegans Y54G11A.1 (Y54G11A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023692 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14255499:14269043:-1 10/11 None
Y54G11A.1 ENSEMBL cdna:known chromosome:CEL140:II:14256241:14269043:-1 gene:Y54G11A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023644 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14256237-14269040(-) 98.3 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G11A.1
Entrez Gene 190294 Entrez gene
SwissProt Q9XVZ7 EMBL-EBI
WormBase CE22472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22455 Hypothetical protein Y54G11A.1 [Caenorhabditis elegans] ref|NP_496972.1| Y54G11A.1 [Caenorhabditis elegans] 0.0
blast CAE73249 Hypothetical protein CBG20665 [Caenorhabditis briggsae] 1.0E-36
Sequence
Target Sequence 
>C. ELEGANS:185926_AT
gtaccacgggctcagccgaatgagaagctggaatttgtggagccaccagagcttggagcc
ggagcacaagatccccgagcaattgagatacttgggagccgggatcatccggatccatgg
gatgaggtggagcatcaagaggatcgggaggctcaggaggatcaggaaacaaaaagaacg
ctcgggggagctccagcagaggaagaagccgccgatttttcccatcacaatgcggttcag
accaataatcttccggtgatgagattcgataaagttgaggaggaagaggttgagcagatc
tcatcggcgatggaaatgtctacggaaaatgctgcgtcgaattggaatatttatggattt
ttgatgattttcttttttcaaaaaaaaaaagccattttccaccgtctccaaagccctaga
ttgctctcgaaaatgcctcgaaatagtcacaatttttatatcattgacaccgttagaaaa
attgaattttatcgcaaaaaaatgcgatgtgctcctttaagaagtacggtagaaaaaatt
gaattttattttttaaaaaattttcgagctaccgtacgtacttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCACGGGCTCAGCCGAATGAGA 630 455 1270 Antisense
TTGTGGAGCCACCAGAGCTTGGAGC 368 709 1304 Antisense
AGCACAAGATCCCCGAGCAATTGAG 398 75 1332 Antisense
TGGGAGCCGGGATCATCCGGATCCA 126 553 1362 Antisense
AAAAGAACGCTCGGGGGAGCTCCAG 317 129 1441 Antisense
GATTTTTCCCATCACAATGCGGTTC 100 429 1483 Antisense
TGAGCAGATCTCATCGGCGATGGAA 284 569 1560 Antisense
TCTCCAAAGCCCTAGATTGCTCTCG 303 609 1674 Antisense
GATTGCTCTCGAAAATGCCTCGAAA 678 433 1688 Antisense
AATGCGATGTGCTCCTTTAAGAAGT 573 163 1770 Antisense
TTTCGAGCTACCGTACGTACTTCTC 355 669 1831 Antisense
Sequence Source Affymetrix Proprietary Database