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[185925_at]

Description F54D10.9 /REP_DB=WormBase Gene ID /WP=CE19459 /TR=Q9TZ81 /GB=AAC68787.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 01      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 32.7
(-1.1)
A 		10.1
(-3)
A 		51.9
(0.6)
A 		80.3
(3)
A 		70
B 23.4
(-1.4)
A 		39.5
(-0)
A 		5.1
(-3)
A 		74.3
(3)
A 		69
C 23.9
(-1.5)
A 		14.7
(-3)
A 		25.2
(-1.3)
A 		52.2
(3)
A 		38
avr 26.7
(-2.3) 		21.4
(-3) 		27.4
(-2.2) 		68.9
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 54
(1.1)
A 		25.3
(-1.8)
A 		34.8
(-0.8)
A 		15.4
(-2.7)
A 		12.9
(-3)
A 		72.5
(3)
A 		60
B 48.4
(3)
A 		44.4
(2.4)
A 		7.9
(-3)
A 		10
(-2.7)
A 		46.5
(2.7)
A 		37
(1.3)
A 		41
C 10.4
(-3)
A 		47.2
(0.6)
A 		71.9
(3)
A 		16.2
(-2.4)
A 		13.9
(-2.7)
A 		18.2
(-2.2)
A 		62
avr 37.6
(2) 		39
(2.2) 		38.2
(2.1) 		13.9
(-3) 		24.4
(-0.8) 		42.6
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.9
(2.1)
A 		2.2
(-3)
A 		13.6
(3)
A 		11.8
(2.1)
A 		11
B 7.5
(-0.4)
A 		9.8
(0.5)
A 		1.2
(-3)
A 		15.8
(3)
A 		15
C 7.9
(1.8)
A 		4.2
(-3)
A 		8.8
(3)
A 		8.8
(3)
A 		5
avr 9.1
(0.3) 		5.4
(-3) 		7.9
(-0.8) 		12.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10
(-0.3)
A 		9
(-0.8)
A 		7.6
(-1.4)
A 		3.9
(-3)
A 		3.9
(-3)
A 		17.6
(3)
A 		14
B 16.8
(2.3)
A 		14.8
(1.6)
A 		1.9
(-3)
A 		2.6
(-2.8)
A 		18.9
(3)
A 		13.8
(1.2)
A 		17
C 3.9
(-2.8)
A 		14.4
(1.4)
A 		18.3
(3)
A 		3.3
(-3)
A 		4.5
(-2.5)
A 		6.1
(-1.9)
A 		15
avr 10.2
(1.4) 		12.7
(3) 		9.3
(0.8) 		3.3
(-3) 		9.1
(0.7) 		12.5
(2.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5940
Sequence Type Exemplar sequence
Representative Public ID F54D10.9 NCBI
Target Description F54D10.9 /REP_DB=WormBase Gene ID /WP=CE19459 /TR=Q9TZ81 /GB=AAC68787.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062263 NCBI Caenorhabditis elegans F54D10.9 (F54D10.9) mRNA, complete cds. 11/11 None
F54D10.9 ENSEMBL cdna:known chromosome:CEL140:II:3829577:3831907:-1 gene:F54D10.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028364 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028374 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3829575-3831906(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54D10.9
Entrez Gene 186236 Entrez gene
SwissProt Q9TZ81 EMBL-EBI
WormBase CE19459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68787 Hypothetical protein F54D10.9 [Caenorhabditis elegans] ref|NP_494664.1| F54D10.9 [Caenorhabditis elegans] 0.0
blast CAC14395 Hypothetical protein Y116F11B.2 [Caenorhabditis elegans] emb|CAC15860.1| Hypothetical protein Y116F11B.2 [Caenorhabditis elegans] ref|NP_507839.1| Y116F11B.2 [Caenorhabditis elegans] 5.0E-51
blast AAK68160 Hypothetical protein C04G6.2 [Caenorhabditis elegans] ref|NP_494941.1| C04G6.2 [Caenorhabditis elegans] 8.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185925_AT
gcatcccaagttcgtcagactggtgtctacgtgcagaggaaattaacatatatggtatag
tgtacgagaatgcaaatggaaatgaatgctcatctgcgtttacatgcccagcaggaacag
ttgcgtactttgacaacggtggaccagatgaagagctgggaaactattatggtcttgaca
cggtgtatatgtattgtgcggagactggtcccgcagccgatattgggagatggtggtaca
acaagccttttaacgtgcaaacttatttcaataaggttacatgcagacgagctccagatc
cgccaacatcatgcacgaactgtctcccagtttacaacgagctttgctatggtcaggata
ttccaactcccaccgactggtgctcgactgctgccgagattccgattgtctacgaaattg
atcaatttaacactgaatgctcagcaaggttcacatgcccgacgggaacatattggtcgt
tggacactggtggacctatggagataagaggagattcgctgggattcactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCCCAAGTTCGTCAGACTGGTG 409 309 722 Antisense
CAGACTGGTGTCTACGTGCAGAGGA 637 203 737 Antisense
TGAATGCTCATCTGCGTTTACATGC 468 575 804 Antisense
ATTGTGCGGAGACTGGTCCCGCAGC 510 3 914 Antisense
TACATGCAGACGAGCTCCAGATCCG 236 643 999 Antisense
CAACATCATGCACGAACTGTCTCCC 547 187 1025 Antisense
ACTGTCTCCCAGTTTACAACGAGCT 277 95 1040 Antisense
TGCTGCCGAGATTCCGATTGTCTAC 27 583 1110 Antisense
GAATGCTCAGCAAGGTTCACATGCC 283 331 1156 Antisense
GTCGTTGGACACTGGTGGACCTATG 445 471 1197 Antisense
GAGGAGATTCGCTGGGATTCACTGA 54 405 1229 Antisense
Sequence Source Affymetrix Proprietary Database