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[185923_at]

Description R01B10.3 /REP_DB=WormBase Gene ID /WP=CE18090 /TR=O61974 /GB=AAC17765.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 72      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 55      6grp_total > 73      4grp_total > 04      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3156
1 2 3 4 range
A 1422.4
(-2.1)
P 		994.2
(-2.9)
P 		962.7
(-3)
P 		4074.7
(3)
P 		3112
B 1691.2
(-1.8)
P 		1138.2
(-3)
P 		1207.9
(-2.8)
P 		3794.3
(3)
P 		2656
C 1606.7
(-1.5)
P 		919
(-3)
P 		982.2
(-2.9)
P 		3677.4
(3)
P 		2758
avr 1573.4
(-1.8) 		1017.1
(-3) 		1050.9
(-2.9) 		3848.8
(3) 		2832

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1244
1 2 3 4 5 6 range
A 1106
(-3)
P 		1232.1
(-2.4)
P 		2248.2
(2.5)
P 		2349.6
(3)
P 		1575.2
(-0.7)
P 		1351.5
(-1.8)
P 		1244
B 1199.8
(-2.8)
P 		1188.1
(-2.9)
P 		1749.8
(1.5)
P 		1947.1
(3)
P 		1717.7
(1.2)
P 		1169.1
(-3)
P 		778
C 1467.9
(-1.6)
P 		1299.5
(-3)
P 		1894.6
(1.9)
P 		1753.9
(0.8)
P 		2025.5
(3)
P 		1297.5
(-3)
P 		728
avr 1257.9
(-2.9) 		1239.9
(-3) 		1964.2
(2.6) 		2016.9
(3) 		1772.8
(1.1) 		1272.7
(-2.7) 		777
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 593
1 2 3 4 range
A 517.9
(1.8)
P 		215.8
(-3)
P 		251.7
(-2.4)
P 		596.5
(3)
P 		381
B 539.3
(-0.1)
P 		281.1
(-3)
P 		279.9
(-3)
P 		808.6
(3)
P 		529
C 531.9
(1.5)
P 		264.2
(-3)
P 		342.3
(-1.7)
P 		620.1
(3)
P 		356
avr 529.7
(0.9) 		253.7
(-3) 		291.3
(-2.5) 		675.1
(3) 		421

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 203.9
(-3)
P 		438.2
(0.6)
P 		489.6
(1.4)
P 		595.9
(3)
P 		475.3
(1.2)
P 		329.1
(-1.1)
P 		392
B 417.5
(-2.6)
P 		395.5
(-3)
P 		424.9
(-2.4)
P 		515.7
(-0.6)
P 		697.9
(3)
P 		436
(-2.2)
P 		302
C 544.1
(0.8)
P 		396.5
(-2.1)
P 		482.2
(-0.4)
P 		352.7
(-3)
P 		655.4
(3)
P 		434.4
(-1.4)
P 		303
avr 388.5
(-3) 		410.1
(-2.4) 		465.6
(-0.9) 		488.1
(-0.3) 		609.5
(3) 		399.8
(-2.7) 		221
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185923_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12350
Sequence Type Exemplar sequence
Representative Public ID R01B10.3 NCBI
Target Description R01B10.3 /REP_DB=WormBase Gene ID /WP=CE18090 /TR=O61974 /GB=AAC17765.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072165 NCBI Caenorhabditis elegans R01B10.3 (R01B10.3) mRNA, complete cds. 11/11 None
SNAP00000013413 ENSEMBL cdna:SNAP chromosome:CEL140:V:6047241:6047637:-1 11/11 None
GENEFINDER00000013429 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6047241:6047637:-1 11/11 None
R01B10.3 ENSEMBL cdna:known chromosome:CEL140:V:6047241:6047637:-1 gene:R01B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6047240-6047637(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R01B10.3
Entrez Gene 178991 Entrez gene
SwissProt O61974 EMBL-EBI
WormBase CE18090 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17765 Hypothetical protein R01B10.3 [Caenorhabditis elegans] ref|NP_504566.1| R01B10.3 [Caenorhabditis elegans] 2.0E-32
blast CAE64524 Hypothetical protein CBG09262 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504566.1 1 55-77
R01B10.3 1 55-77
SNAP00000013413 1 55-77
GENEFINDER00000013429 1 55-77
Sequence
Target Sequence 
>C. ELEGANS:185923_AT
atgagaaccgactctgtgacagattcctgctgtagcagtgagtattcatattgtagctgt
gattgcgtcaaacaacgaaaagttgccgaggttccacaaatcgggtacagtcttgatgag
ctcaatgctaaaagggaggaaccgaaatggagagttgccagatacactgcaattgcgatg
ttctggggaatttggggagcgctgcttgcaggctcaatccttatcattgtgctcaataat
cacgacgttgcgagcactactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGAACCGACTCTGTGACAGATT 209 43 13 Antisense
GTGACAGATTCCTGCTGTAGCAGTG 55 483 28 Antisense
TATTGTAGCTGTGATTGCGTCAAAC 502 665 61 Antisense
GAAAAGTTGCCGAGGTTCCACAAAT 632 351 89 Antisense
GGTTCCACAAATCGGGTACAGTCTT 414 507 102 Antisense
GGTACAGTCTTGATGAGCTCAATGC 79 505 116 Antisense
GAGAGTTGCCAGATACACTGCAATT 407 395 162 Antisense
CACTGCAATTGCGATGTTCTGGGGA 5 197 177 Antisense
TCTGGGGAATTTGGGGAGCGCTGCT 289 605 194 Antisense
GCTTGCAGGCTCAATCCTTATCATT 372 307 216 Antisense
ATCACGACGTTGCGAGCACTACTGC 16 29 251 Antisense
Sequence Source Affymetrix Proprietary Database