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[185922_at] 7TM chemoreceptor, srw family

Description R11G11.5 /REP_DB=WormBase Gene ID /WP=CE12748 /TR=O16957 /GB=AAC69080.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 20      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 22.7
(-2.1)
A 		24.5
(-1.8)
A 		16.9
(-3)
A 		54.3
(3)
A 		37
B 24.1
(3)
A 		6
(-2.3)
A 		3.8
(-3)
A 		10.7
(-1)
A 		20
C 8
(-3)
A 		28.2
(3)
A 		10.6
(-2.2)
A 		26.8
(2.6)
A 		20
avr 18.3
(-0.7) 		19.6
(-0.3) 		10.4
(-3) 		30.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 11.6
(-1.8)
A 		5.6
(-3)
A 		11.7
(-1.8)
A 		24.2
(0.7)
A 		20.4
(-0)
A 		35.5
(3)
A 		30
B 29.3
(-0.4)
A 		61.8
(3)
A 		7.9
(-2.6)
A 		4.6
(-2.9)
A 		35.4
(0.3)
A 		4
(-3)
A 		58
C 30.3
(-0.5)
A 		10.1
(-3)
A 		37.9
(0.4)
A 		59.1
(3)
A 		25.2
(-1.2)
A 		27.2
(-0.9)
A 		49
avr 23.7
(-0.3) 		25.8
(0.9) 		19.2
(-3) 		29.3
(3) 		27
(1.6) 		22.2
(-1.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 8.3
(3)
A 		5.3
(-1.6)
A 		4.4
(-3)
A 		8
(2.5)
A 		4
B 7.7
(3)
A 		1.5
(-2.5)
A 		0.9
(-3)
A 		2.3
(-1.8)
A 		7
C 2.6
(-3)
A 		8.1
(3)
A 		3.7
(-1.8)
A 		4.5
(-0.9)
A 		6
avr 6.2
(3) 		5
(0.8) 		3
(-3) 		4.9
(0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.1
(-2.9)
A 		2
(-3)
A 		2.5
(-2.5)
A 		6.1
(0.7)
A 		6.2
(0.8)
A 		8.6
(3)
A 		7
B 10.2
(-0.2)
A 		20.6
(3)
A 		1.9
(-2.8)
A 		1.2
(-3)
A 		14.4
(1.1)
A 		1.5
(-2.9)
A 		19
C 11.2
(2.5)
A 		3.1
(-3)
A 		9.6
(1.4)
A 		11.9
(3)
A 		8.1
(0.4)
A 		9.1
(1.1)
A 		9
avr 7.8
(0.8) 		8.6
(1.8) 		4.7
(-3) 		6.4
(-0.9) 		9.6
(3) 		6.4
(-0.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185922_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15215
Sequence Type Exemplar sequence
Representative Public ID R11G11.5 NCBI
Target Description R11G11.5 /REP_DB=WormBase Gene ID /WP=CE12748 /TR=O16957 /GB=AAC69080.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070833 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-108) (srw-108) mRNA, complete cds. 11/11 None
R11G11.5 ENSEMBL cdna:known chromosome:CEL140:V:527731:528698:1 gene:R11G11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021490 6/11 Cross Hyb Matching Probes None
GENEFINDER00000021497 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:527730-528698(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-108
Ensembl R11G11.5
Entrez Gene 187824 Entrez gene
SwissProt O16957 EMBL-EBI
WormBase CE12748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503234 Serpentine Receptor, class W family member (srw-108) [Caenorhabditis elegans] gb|AAC69080.1| Serpentine receptor, class w protein 108 [Caenorhabditis elegans] 1.0E-82
blast CAE65483 Hypothetical protein CBG10450 [Caenorhabditis briggsae] 7.0E-37
blast CAE70992 Hypothetical protein CBG17824 [Caenorhabditis briggsae] 5.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503234.1 4 24-46,56-73,94-116,131-153
R11G11.5 4 24-46,56-73,94-116,131-153
Sequence
Target Sequence 
>C. ELEGANS:185922_AT
ttttcctttcaattgtctccattaacgtaaacattttgcacgctataattctgacaagaa
gctccatgaaatccacgtcgaccaatgtgataatagtattaaccattctcctacttcatg
ctctgaataaagccaagaaggcacggaagaagaagaagagttcattgagagatactgatc
acacaacaaagctggtagtattcatgacagcagcttttttctttgctgaagctccgcttg
gagtaatttatatgattaatgcgttttatcacaccaatgatggattaataatcgcctcgg
tggacgtcattattgtttttgcctctcttctaaccatcaactccacctgccactttatat
tctgtattttcctatccagacaataccgtagcacactctactacacgctaagactacatc
tactggtaaactcaacgcgtaccgaggcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCCTTTCAATTGTCTCCATTAA 532 677 98 Antisense
AAGAAGCTCCATGAAATCCACGTCG 137 153 153 Antisense
TATTAACCATTCTCCTACTTCATGC 428 655 194 Antisense
TCATGACAGCAGCTTTTTTCTTTGC 214 623 299 Antisense
TTTCTTTGCTGAAGCTCCGCTTGGA 435 671 315 Antisense
GATTAATGCGTTTTATCACACCAAT 79 429 351 Antisense
TAATAATCGCCTCGGTGGACGTCAT 66 631 383 Antisense
TCCACCTGCCACTTTATATTCTGTA 443 589 439 Antisense
TCCAGACAATACCGTAGCACACTCT 290 587 472 Antisense
AGCACACTCTACTACACGCTAAGAC 62 77 487 Antisense
TAAACTCAACGCGTACCGAGGCAAC 209 637 524 Antisense
Sequence Source Affymetrix Proprietary Database