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[185921_at]

Description C44B11.1 /REP_DB=WormBase Gene ID /WP=CE27849 /TR=O01908 /GB=AAB54264.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 3.8
(-3)
A 		49.6
(3)
A 		4.9
(-2.9)
A 		38.2
(1.5)
A 		46
B 4.1
(-2.8)
A 		30.1
(1.4)
A 		2.9
(-3)
A 		39.9
(3)
A 		37
C 6.4
(-1.7)
A 		6
(-1.8)
A 		2.8
(-3)
A 		19.1
(3)
A 		16
avr 4.8
(-2.7) 		28.6
(2.2) 		3.5
(-3) 		32.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.8
(-1.1)
A 		2.6
(-3)
A 		21.7
(3)
A 		5.1
(-2.2)
A 		14.3
(0.7)
A 		4.8
(-2.3)
A 		19
B 6.5
(-0.5)
A 		6.4
(-0.6)
A 		2.2
(-3)
A 		12.6
(3)
A 		3
(-2.5)
A 		3.6
(-2.2)
A 		10
C 29.1
(3)
A 		18.9
(0.7)
A 		2.6
(-3)
A 		11
(-1.1)
A 		3.6
(-2.8)
A 		14.4
(-0.3)
A 		27
avr 14.8
(3) 		9.3
(-1.2) 		8.8
(-1.6) 		9.6
(-1) 		7
(-3) 		7.6
(-2.5) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.4
(-2.9)
A 		10.8
(3)
A 		1.3
(-3)
A 		5.6
(-0.3)
A 		10
B 1.3
(-2.5)
A 		7.4
(2.2)
A 		0.7
(-3)
A 		8.5
(3)
A 		8
C 2.1
(0)
A 		1.7
(-1.1)
A 		1
(-3)
A 		3.2
(3)
A 		2
avr 1.6
(-2.4) 		6.6
(3) 		1
(-3) 		5.8
(2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.6
(-1.9)
A 		0.9
(-3)
A 		4.7
(3)
A 		1.3
(-2.4)
A 		4.3
(2.4)
A 		1.2
(-2.5)
A 		4
B 2.3
(0.9)
A 		2.1
(0.4)
A 		0.5
(-3)
A 		3.3
(3)
A 		1.2
(-1.5)
A 		1.3
(-1.3)
A 		3
C 10.8
(3)
A 		5.8
(0)
A 		0.7
(-3)
A 		2.2
(-2.1)
A 		1.2
(-2.7)
A 		4.8
(-0.6)
A 		10
avr 4.9
(3) 		2.9
(-1.1) 		2
(-3) 		2.3
(-2.4) 		2.2
(-2.6) 		2.4
(-2.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185921_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7684
Sequence Type Exemplar sequence
Representative Public ID C44B11.1 NCBI
Target Description C44B11.1 /REP_DB=WormBase Gene ID /WP=CE27849 /TR=O01908 /GB=AAB54264.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065263 NCBI Caenorhabditis elegans C44B11.1 (C44B11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030522 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3152278:3158397:1 10/11 None
SNAP00000030521 ENSEMBL cdna:SNAP chromosome:CEL140:III:3155258:3158344:1 11/11 None
C44B11.1 ENSEMBL cdna:known chromosome:CEL140:III:3155943:3158383:1 gene:C44B11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3155942-3158344(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B11.1
Entrez Gene 175421 Entrez gene
SwissProt O01908 EMBL-EBI
WormBase CE27849 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606134_AT similar to Fas apoptotic inhibitory molecule 1 (rFAIM) cfa
CANINE:1596259_AT similar to Fas apoptotic inhibitory molecule 1 (rFAIM) cfa
CANINE_2:CFA.3417.1.S1_AT similar to Fas apoptotic inhibitory molecule 1 (rFAIM) cfa
CANINE_2:CFAAFFX.12220.1.S1_AT similar to Fas apoptotic inhibitory molecule 1 (rFAIM) cfa
DROSOPHILA_2:1631110_AT dm
DROSGENOME1:147228_AT dm
CHICKEN:GGA.10125.1.S1_A_AT similar to Fas apoptotic inhibitory molecule 1 (rFAIM) gga
CHICKEN:GGAAFFX.23776.1.S1_AT similar to Fas apoptotic inhibitory molecule 1 (rFAIM) gga
HG-U133_PLUS_2:220643_S_AT Fas apoptotic inhibitory molecule hs
HG-U133A:220643_S_AT Fas apoptotic inhibitory molecule hs
HG-U133A_2:220643_S_AT Fas apoptotic inhibitory molecule hs
HU35KSUBA:RC_AA476917_AT Fas apoptotic inhibitory molecule hs
U133_X3P:G8922535_3P_A_AT Fas apoptotic inhibitory molecule hs
HG-U95B:48526_AT Fas apoptotic inhibitory molecule hs
MOE430A:1418029_AT Fas apoptotic inhibitory molecule mm
MOUSE430A_2:1418029_AT Fas apoptotic inhibitory molecule mm
MOUSE430_2:1418029_AT Fas apoptotic inhibitory molecule mm
MG-U74BV2:114352_AT Fas-apoptosis inhibitory molecule (Faim) mm
MU19KSUBA:TC19411_AT Fas-apoptosis inhibitory molecule (Faim) mm
MU19KSUBA:TC19411_G_AT Fas-apoptosis inhibitory molecule (Faim) mm
RAE230A:1370044_AT Fas apoptotic inhibitory molecule rn
RAT230_2:1370044_AT Fas apoptotic inhibitory molecule rn
RG-U34C:RC_AI177251_AT Fas apoptotic inhibitory molecule rn
Protein Similarities
Method ID Description E-Value
blast NP_497664 C44B11.1 [Caenorhabditis elegans] gb|AAB54264.2| Hypothetical protein C44B11.1 [Caenorhabditis elegans] 4.0E-81
blast NP_497664 C44B11.1 [Caenorhabditis elegans] gb|AAB54264.2| Hypothetical protein C44B11.1 [Caenorhabditis elegans] 1.0E-80
blast NP_497664 C44B11.1 [Caenorhabditis elegans] gb|AAB54264.2| Hypothetical protein C44B11.1 [Caenorhabditis elegans] 3.0E-61
blast CAE74674 Hypothetical protein CBG22476 [Caenorhabditis briggsae] 1.0E-60
blast CAE74674 Hypothetical protein CBG22476 [Caenorhabditis briggsae] 4.0E-60
blast AAH97798 Unknown (protein for MGC:115509) [Xenopus laevis] 1.0E-52
blast CAE74674 Hypothetical protein CBG22476 [Caenorhabditis briggsae] 2.0E-52
blast AAH97798 Unknown (protein for MGC:115509) [Xenopus laevis] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR010695 EMBL-EBI Fas apoptotic inhibitory molecule 1.5E-49
Pfam IPR010695 EMBL-EBI Fas apoptotic inhibitory molecule 1.1E-72
Pfam IPR010695 EMBL-EBI Fas apoptotic inhibitory molecule 6.5E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030522 1 42-61
Sequence
Target Sequence 
>C. ELEGANS:185921_AT
gaagccttcaaagttggcgatatgaaatgcatcatcaacgtggaggcgctcggaactttt
gcctatgagtattctctggatggagaattcgtcgacaacggaacagtgacacacttcgag
cttggcaaaaatccatgcaagattattgcacagagcagtggaaagaaaaaaaccggcgtg
acacatacgctctacgtgaacggagaaattgtgccatccactgtagacaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCTTCAAAGTTGGCGATATGA 152 345 34 Antisense
TCATCAACGTGGAGGCGCTCGGAAC 264 619 65 Antisense
GCGCTCGGAACTTTTGCCTATGAGT 695 287 79 Antisense
TTTGCCTATGAGTATTCTCTGGATG 204 665 91 Antisense
GGAGAATTCGTCGACAACGGAACAG 579 517 115 Antisense
CGACAACGGAACAGTGACACACTTC 641 249 126 Antisense
GACACACTTCGAGCTTGGCAAAAAT 37 367 141 Antisense
AAAACCGGCGTGACACATACGCTCT 638 131 202 Antisense
GACACATACGCTCTACGTGAACGGA 213 367 213 Antisense
GAACGGAGAAATTGTGCCATCCACT 312 349 231 Antisense
TGTGCCATCCACTGTAGACAAGCCA 115 557 243 Antisense
Sequence Source Affymetrix Proprietary Database