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[185919_s_at]

Description H04D03.2A /REP_DB=WormBase Gene ID /WP=CE16166 /TR=O45606 /GB=CAA15957.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 24.9
(-3)
A 		80.1
(3)
A 		75.2
(2.5)
A 		37.6
(-1.6)
A 		55
B 54.2
(-1.6)
M 		34.8
(-3)
A 		76.5
(0)
A 		117.1
(3)
P 		82
C 41.8
(-3)
A 		78.5
(-0.1)
A 		69.2
(-0.9)
M 		118.9
(3)
P 		77
avr 40.3
(-3) 		64.5
(-0.1) 		73.6
(0.9) 		91.2
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 57.4
(-1.9)
A 		42.7
(-3)
A 		66.6
(-1.2)
A 		74.7
(-0.6)
P 		115
(2.5)
P 		121.3
(3)
P 		79
B 25.2
(-3)
A 		27.1
(-2.8)
A 		48.2
(-1.2)
A 		74.9
(1)
A 		100.3
(3)
M 		80.4
(1.4)
P 		75
C 47.9
(-2.8)
A 		83.3
(-0)
P 		46
(-3)
A 		73.6
(-0.8)
A 		88.9
(0.4)
P 		121
(3)
P 		75
avr 43.5
(-3) 		51
(-2.3) 		53.6
(-2.1) 		74.4
(-0.1) 		101.4
(2.4) 		107.6
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.1
(-1.5)
A 		17.4
(2)
A 		19.7
(3)
A 		5.5
(-3)
A 		14
B 17.3
(0.2)
M 		8.6
(-3)
A 		17.7
(0.3)
A 		24.9
(3)
P 		16
C 13.8
(-3)
A 		22.6
(2.1)
A 		24.1
(3)
M 		20
(0.6)
P 		10
avr 13.4
(-3) 		16.2
(-0.6) 		20.5
(3) 		16.8
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 10.6
(-3)
A 		15.2
(-1.9)
A 		14.5
(-2)
A 		19
(-0.9)
P 		34.7
(3)
P 		29.5
(1.7)
P 		24
B 8.8
(-3)
A 		9
(-3)
A 		11.7
(-2.5)
A 		19.8
(-0.9)
A 		40.7
(3)
M 		30
(1)
P 		32
C 17.8
(-1.7)
A 		25.4
(-0.1)
P 		11.7
(-3)
A 		14.8
(-2.4)
A 		28.8
(0.6)
P 		40.5
(3)
P 		29
avr 12.4
(-3) 		16.5
(-1.9) 		12.6
(-2.9) 		17.9
(-1.5) 		34.7
(3) 		33.3
(2.6) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185919_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7686
Sequence Type Exemplar sequence
Representative Public ID H04D03.2A NCBI
Target Description H04D03.2A /REP_DB=WormBase Gene ID /WP=CE16166 /TR=O45606 /GB=CAA15957.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066902(11), NM_066903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066902 NCBI Caenorhabditis elegans H04D03.2b (H04D03.2) mRNA, complete cds. 11/11 A 
NM_066903 NCBI Caenorhabditis elegans H04D03.2a (H04D03.2) mRNA, complete cds. 11/11 A 
SNAP00000026564 ENSEMBL cdna:SNAP chromosome:CEL140:III:10438073:10447423:-1 9/11 None
GENEFINDER00000026566 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10439374:10442287:-1 9/11 None
H04D03.2b ENSEMBL cdna:known chromosome:CEL140:III:10438073:10442287:-1 gene:H04D03.2 11/11 A 
H04D03.2a ENSEMBL cdna:known chromosome:CEL140:III:10438073:10442287:-1 gene:H04D03.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10438068-10442283(-) 100.0 100.0
Public Domain and Genome References
Ensembl H04D03.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54258 Hypothetical protein H04D03.2b [Caenorhabditis elegans] ref|NP_499303.1| H04D03.2b [Caenorhabditis elegans] 0.0
blast CAA15957 Hypothetical protein H04D03.2a [Caenorhabditis elegans] ref|NP_499304.1| H04D03.2a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185919_S_AT
cgccgatctcgttccacgaaaatggtctttcattcgtcagagagggcgataaaatggaac
tgaaactagtgaataagccacgtgaaatgattcgggaagagactggtccaccagaaatcc
cacaccgcggatcaactccaccaccaatttgcaacggaaacgccagaagaactcgtttcg
catcattttctgcacatcgacatggtttgttaaatatttacagaaaaccccgagaaaatt
ttgagaaaaatgaaaaaaaaaagtttttctctgaaatttttcaaaaaacagtctctacac
aaggtccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCGATCTCGTTCCACGAAAATGG 186 257 1628 Antisense
GTTCCACGAAAATGGTCTTTCATTC 15 439 1638 Antisense
GGTCTTTCATTCGTCAGAGAGGGCG 151 503 1651 Antisense
TAAGCCACGTGAAATGATTCGGGAA 699 629 1701 Antisense
GATTCGGGAAGAGACTGGTCCACCA 693 431 1716 Antisense
GAGACTGGTCCACCAGAAATCCCAC 543 393 1726 Antisense
ACTCCACCACCAATTTGCAACGGAA 160 99 1762 Antisense
GCAACGGAAACGCCAGAAGAACTCG 435 319 1778 Antisense
ACGCCAGAAGAACTCGTTTCGCATC 58 91 1787 Antisense
TTTTCTGCACATCGACATGGTTTGT 258 677 1813 Antisense
AAACAGTCTCTACACAAGGTCCAAA 112 129 1913 Antisense
Sequence Source Affymetrix Proprietary Database