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[185918_at]

Description Y71H2B.3 /REP_DB=WormBase Gene ID /WP=CE24630 /TR=Q9N4E9 /GB=AAF36032.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 6.9
(-3)
A 		29.5
(-0.6)
A 		63.5
(3)
A 		31.3
(-0.4)
A 		57
B 46.5
(-0.2)
A 		37.4
(-0.9)
A 		8.6
(-3)
A 		89.3
(3)
A 		81
C 46.1
(3)
A 		32.2
(0.8)
A 		18.5
(-1.4)
A 		8.5
(-3)
A 		38
avr 33.2
(-1.6) 		33
(-1.7) 		30.2
(-3) 		43
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 5.6
(-2.3)
A 		2.4
(-2.9)
A 		35.6
(3)
A 		1.9
(-3)
A 		31.7
(2.3)
A 		13.7
(-0.9)
A 		34
B 5.1
(-2.8)
A 		2.8
(-3)
A 		29.3
(-1.2)
A 		38.7
(-0.6)
A 		3.1
(-3)
A 		91.9
(3)
P 		89
C 2.6
(-3)
A 		6.8
(-2.6)
A 		7.1
(-2.5)
A 		7.9
(-2.4)
A 		6.9
(-2.6)
A 		60.2
(3)
P 		58
avr 4.4
(-3) 		4
(-3) 		24
(-0.7) 		16.2
(-1.6) 		13.9
(-1.8) 		55.3
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.5
(-3)
A 		6.4
(-1.3)
A 		16.6
(3)
A 		4.6
(-2.1)
A 		14
B 14.8
(1.5)
A 		9.2
(-0.5)
A 		2
(-3)
A 		19
(3)
A 		17
C 15.3
(3)
A 		9.2
(0.4)
A 		6.4
(-0.8)
A 		1.4
(-3)
A 		14
avr 10.9
(3) 		8.3
(-3) 		8.3
(-3) 		8.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1
(-2.7)
A 		0.8
(-2.8)
A 		7.7
(1.7)
A 		0.5
(-3)
A 		9.6
(3)
A 		3.3
(-1.2)
A 		9
B 1.8
(-2.8)
A 		0.9
(-3)
A 		7.1
(-1.9)
A 		10.3
(-1.3)
A 		1.2
(-2.9)
A 		34.3
(3)
P 		33
C 1
(-3)
A 		2.1
(-2.7)
A 		1.8
(-2.8)
A 		1.6
(-2.8)
A 		2.2
(-2.6)
A 		20.2
(3)
P 		19
avr 1.3
(-3) 		1.3
(-3) 		5.5
(-1.6) 		4.1
(-2.1) 		4.3
(-2) 		19.3
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185918_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7045
Sequence Type Exemplar sequence
Representative Public ID Y71H2B.3 NCBI
Target Description Y71H2B.3 /REP_DB=WormBase Gene ID /WP=CE24630 /TR=Q9N4E9 /GB=AAF36032.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065190 NCBI Caenorhabditis elegans Y71H2B.3 (Y71H2B.3) mRNA, complete cds. 11/11 None
SNAP00000014010 ENSEMBL cdna:SNAP chromosome:CEL140:III:2618979:2622330:1 11/11 None
GENEFINDER00000014042 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2619928:2622330:1 11/11 None
Y71H2B.3 ENSEMBL cdna:known chromosome:CEL140:III:2619925:2623038:1 gene:Y71H2B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2619927-2622330(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H2B.3
Entrez Gene 190617 Entrez gene
SwissProt Q9N4E9 EMBL-EBI
WormBase CE24630 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248300_AT protein phosphatase 2A-associated 46 kDa protein / PP2A regulatory subunit (TAP46) at
CANINE:1585078_AT similar to Immunoglobulin-binding protein 1 (CD79a-binding protein 1) (B cell signal transduction molecule alpha 4) (Alpha 4 protein) cfa
CANINE_2:CFA.12570.1.A1_AT similar to Immunoglobulin-binding protein 1 (CD79a-binding protein 1) (B cell signal transduction molecule alpha 4) (Alpha 4 protein) cfa
CANINE_2:CFAAFFX.25616.1.S1_AT similar to Immunoglobulin-binding protein 1 (CD79a-binding protein 1) (B cell signal transduction molecule alpha 4) (Alpha 4 protein) cfa
CANINE_2:CFAAFFX.25616.1.S1_S_AT similar to Immunoglobulin-binding protein 1 (CD79a-binding protein 1) (B cell signal transduction molecule alpha 4) (Alpha 4 protein) cfa
DROSOPHILA_2:1636327_AT dm
HG-U133_PLUS_2:202105_AT immunoglobulin (CD79A) binding protein 1 hs
HG-U133A:202105_AT immunoglobulin (CD79A) binding protein 1 hs
HG-FOCUS:202105_AT immunoglobulin (CD79A) binding protein 1 hs
HG-U133A_2:202105_AT immunoglobulin (CD79A) binding protein 1 hs
HU35KSUBA:Y08915_AT immunoglobulin (CD79A) binding protein 1 hs
HUGENEFL:Y08915_AT immunoglobulin (CD79A) binding protein 1 hs
U133_X3P:G4557662_3P_AT immunoglobulin (CD79A) binding protein 1 hs
HG-U95AV2:34391_AT immunoglobulin (CD79A) binding protein 1 hs
HG-U133_PLUS_2:242337_AT Immunoglobulin (CD79A) binding protein 1 hs
HG-U133B:242337_AT Immunoglobulin (CD79A) binding protein 1 hs
HG-U95E:85850_AT Immunoglobulin (CD79A) binding protein 1 hs
U133_X3P:HS.191870.0.A1_3P_AT Immunoglobulin (CD79A) binding protein 1 hs
MU11KSUBA:AA475426_AT immunoglobulin (CD79A) binding protein 1 mm
MG-U74AV2:101102_AT immunoglobulin (CD79A) binding protein 1 mm
MG-U74AV2:162460_F_AT immunoglobulin (CD79A) binding protein 1 mm
MOE430A:1420000_S_AT immunoglobulin (CD79A) binding protein 1 mm
MOUSE430A_2:1420000_S_AT immunoglobulin (CD79A) binding protein 1 mm
MOUSE430_2:1420000_S_AT immunoglobulin (CD79A) binding protein 1 mm
MOE430A:1460737_AT immunoglobulin (CD79A) binding protein 1 mm
MOUSE430A_2:1460737_AT immunoglobulin (CD79A) binding protein 1 mm
MOUSE430_2:1460737_AT immunoglobulin (CD79A) binding protein 1 mm
MOE430A:1419999_AT immunoglobulin (CD79A) binding protein 1 mm
MOUSE430A_2:1419999_AT immunoglobulin (CD79A) binding protein 1 mm
MOUSE430_2:1419999_AT immunoglobulin (CD79A) binding protein 1 mm
MU19KSUBB:TC33320_AT immunoglobulin (CD79A) binding protein 1 mm
MU19KSUBB:TC33320_G_AT immunoglobulin (CD79A) binding protein 1 mm
MG-U74BV2:105382_AT Immunoglobulin (CD79A) binding protein 1, mRNA (cDNA clone MGC:107340 IMAGE:30297519) mm
MOE430B:1442161_AT Immunoglobulin (CD79A) binding protein 1, mRNA (cDNA clone MGC:107340 IMAGE:30297519) mm
MOUSE430_2:1442161_AT Immunoglobulin (CD79A) binding protein 1, mRNA (cDNA clone MGC:107340 IMAGE:30297519) mm
MOE430A:1449700_AT Immunoglobulin (CD79A) binding protein 1, mRNA (cDNA clone MGC:107340 IMAGE:30297519) mm
MOUSE430A_2:1449700_AT Immunoglobulin (CD79A) binding protein 1, mRNA (cDNA clone MGC:107340 IMAGE:30297519) mm
MOUSE430_2:1449700_AT Immunoglobulin (CD79A) binding protein 1, mRNA (cDNA clone MGC:107340 IMAGE:30297519) mm
RG-U34A:RC_AI011179_AT immunoglobulin (CD79A) binding protein 1 rn
RAE230A:1369981_AT immunoglobulin (CD79A) binding protein 1 rn
RAT230_2:1369981_AT immunoglobulin (CD79A) binding protein 1 rn
YEAST_2:1778034_AT Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9607 response to biotic stimulus inferred from electronic annotation QuickGO AmiGO
9966 regulation of signal transduction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36032 Hypothetical protein Y71H2B.3 [Caenorhabditis elegans] ref|NP_497591.1| Y71H2B.3 [Caenorhabditis elegans] 1.0E-172
blast CAE64991 Hypothetical protein CBG09827 [Caenorhabditis briggsae] 1.0E-138
blast AAF36033 Hypothetical protein Y71H2B.4 [Caenorhabditis elegans] ref|NP_497590.1| Y71H2B.4 [Caenorhabditis elegans] 2.0E-47
blast NP_998687 hypothetical protein LOC406843 [Danio rerio] gb|AAH45313.1| Similar to immunoglobulin (CD79A) binding protein 1 [Danio rerio] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007304 EMBL-EBI TAP42-like protein 1.0E-126
Pfam IPR007304 EMBL-EBI TAP42-like protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185918_AT
gatcaccaccagattaccatgggaagatgaggatacagaagagcaaaatttaaaggagaa
gccgaagcttgcagttgaagagatcagaagattgaagttggagcgtcacaagaagaagca
agagctcaaaatggcggagctcaggatccaaaagcagctggaagccgtttcaattgatga
gcagaatctcagagagctctatattactcagttattgttctggagtgaaagatgttacga
ggagttgcaggcgattgatgacgagcttccactgctgaaaatgatggctgaacgagcatc
tcacccacatcgtcatccagctccaccaccagcaacaaagacagttccaacacttaaacc
cttcattattaccagagatgctcaacagaagcaggtctttgggctcggatatccaggaat
tccagcgatgagtgtcgatgaatggtatcatcagaaattcggtcataatccacaaaatgc
tccacaatcgtcggctccagccggggcagaagctcaagaatccgaagaagaggttgatga
tgacgaggcgagagcgaaggcgatgcgttggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCACCACCAGATTACCATGGGAA 502 421 369 Antisense
ATGGCGGAGCTCAGGATCCAAAAGC 522 51 499 Antisense
GCAGCTGGAAGCCGTTTCAATTGAT 553 313 522 Antisense
GCAGGCGATTGATGACGAGCTTCCA 475 311 615 Antisense
GACGAGCTTCCACTGCTGAAAATGA 496 377 628 Antisense
TGATGGCTGAACGAGCATCTCACCC 398 567 650 Antisense
CAGTTCCAACACTTAAACCCTTCAT 445 205 710 Antisense
GAAGCAGGTCTTTGGGCTCGGATAT 329 341 756 Antisense
TCCAGGAATTCCAGCGATGAGTGTC 260 591 780 Antisense
CTCCAGCCGGGGCAGAAGCTCAAGA 516 235 863 Antisense
GCGAGAGCGAAGGCGATGCGTTGGG 105 291 916 Antisense
Sequence Source Affymetrix Proprietary Database