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[185916_at]

Description R11G11.6 /REP_DB=WormBase Gene ID /WP=CE12750 /TR=O16949 /GB=AAC69081.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 99.2
(-3)
A 		315.7
(3)
P 		204.9
(-0.1)
M 		108.6
(-2.7)
A 		217
B 136.8
(-1.2)
A 		311.3
(3)
P 		211.8
(0.6)
P 		60.8
(-3)
A 		251
C 123.5
(-2.3)
A 		354.3
(3)
P 		138.3
(-1.9)
P 		91.6
(-3)
A 		263
avr 119.8
(-2.2) 		327.1
(3) 		185
(-0.6) 		87
(-3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 62.2
(-2.7)
A 		159.8
(2.3)
P 		74.3
(-2)
P 		174.2
(3)
P 		141.3
(1.3)
A 		55.4
(-3)
A 		119
B 53.8
(-3)
A 		182.2
(3)
A 		74.4
(-2)
A 		140.4
(1)
A 		151.9
(1.6)
M 		77.6
(-1.9)
A 		128
C 87
(-0.7)
A 		165.2
(2.4)
A 		115.2
(0.4)
A 		180.5
(3)
P 		141.2
(1.4)
P 		30.7
(-3)
A 		150
avr 67.7
(-2.3) 		169.1
(3) 		88
(-1.2) 		165
(2.8) 		144.8
(1.7) 		54.6
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 36.1
(-0.7)
A 		68.5
(3)
P 		53.6
(1.3)
M 		15.9
(-3)
A 		53
B 43.6
(-0.1)
A 		76.9
(3)
P 		49.1
(0.4)
P 		13
(-3)
A 		64
C 40.9
(-1.2)
A 		101.9
(3)
P 		48.2
(-0.7)
P 		15.4
(-3)
A 		87
avr 40.2
(-0.7) 		82.4
(3) 		50.3
(0.2) 		14.8
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 11.5
(-3)
A 		56.8
(3)
P 		16.2
(-2.4)
P 		44.2
(1.3)
P 		42.6
(1.1)
A 		13.5
(-2.7)
A 		45
B 18.7
(-2.9)
A 		60.6
(2.8)
A 		18.1
(-3)
A 		37.2
(-0.4)
A 		61.7
(3)
M 		28.9
(-1.5)
A 		44
C 32.3
(0.3)
A 		50.4
(3)
A 		29.3
(-0.2)
A 		36.3
(0.9)
P 		45.7
(2.3)
P 		10.3
(-3)
A 		40
avr 20.8
(-2.5) 		55.9
(3) 		21.2
(-2.4) 		39.2
(0.4) 		50
(2.1) 		17.6
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15181
Sequence Type Exemplar sequence
Representative Public ID R11G11.6 NCBI
Target Description R11G11.6 /REP_DB=WormBase Gene ID /WP=CE12750 /TR=O16949 /GB=AAC69081.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070825 NCBI Caenorhabditis elegans R11G11.6 (R11G11.6) mRNA, complete cds. 11/11 None
SNAP00000021483 ENSEMBL cdna:SNAP chromosome:CEL140:V:505351:505834:1 11/11 None
GENEFINDER00000021494 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:505351:505834:1 11/11 None
R11G11.6 ENSEMBL cdna:known chromosome:CEL140:V:505351:505834:1 gene:R11G11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:505350-505834(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11G11.6
Entrez Gene 187825 Entrez gene
SwissProt O16949 EMBL-EBI
WormBase CE12750 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503226 R11G11.6 [Caenorhabditis elegans] gb|AAC69081.1| Hypothetical protein R11G11.6 [Caenorhabditis elegans] 9.0E-71
blast AAB69957 Prion-like-(q/n-rich)-domain-bearing protein protein 97 [Caenorhabditis elegans] ref|NP_503262.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-97) [Caenorhabditis elegans] 2.0E-34
blast AAB69954 Prion-like-(q/n-rich)-domain-bearing protein protein 98 [Caenorhabditis elegans] ref|NP_503259.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-98) [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.3E-62
Sequence
Target Sequence 
>C. ELEGANS:185916_AT
ctattttatcctcgctgttctgattgctgtgactgctgctgctagttacaacaaaccaaa
tttcgtgaaggatttgccagataacatgcaaaagtcctatgctacaattgtacgcaattc
ccagctgacaaaacttcaaaaggatgagcagcttcaacagtgggctcagaccaataatct
ttcggatcagtacactgcatataccaagaaacaacaggataatgagaatttcatgagcaa
aaacacaacacaaatcatctcccaactatcttcagttcaagctcaacttgaagcgatttt
gagcaacaaaaatctcactcgcgatcaggaggaagaagccatcgactcacttgaggagca
atactggcaagaggttccagttctgcttttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTTTATCCTCGCTGTTCTGATT 451 223 21 Antisense
GTTCTGATTGCTGTGACTGCTGCTG 105 443 37 Antisense
GTGACTGCTGCTGCTAGTTACAACA 253 483 49 Antisense
CAATTGTACGCAATTCCCAGCTGAC 350 179 125 Antisense
GCAGCTTCAACAGTGGGCTCAGACC 70 313 168 Antisense
TAATCTTTCGGATCAGTACACTGCA 466 627 195 Antisense
AAAACACAACACAAATCATCTCCCA 192 131 260 Antisense
CATCTCCCAACTATCTTCAGTTCAA 13 213 276 Antisense
AAAATCTCACTCGCGATCAGGAGGA 313 131 329 Antisense
GAAGCCATCGACTCACTTGAGGAGC 474 345 355 Antisense
AAGAGGTTCCAGTTCTGCTTTTCAT 191 155 389 Antisense
Sequence Source Affymetrix Proprietary Database