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[185911_at]

Description F56C9.10 /REP_DB=WormBase Gene ID /WP=CE01320 /TR=Q20869 /GB=AAK18965.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 77      6grp_total > 48      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1188
1 2 3 4 range
A 1940.9
(1.5)
P 		1272.3
(-2.6)
P 		1209.2
(-3)
P 		2183.2
(3)
P 		974
B 1845
(-0)
P 		1425.8
(-2.3)
P 		1304.9
(-3)
P 		2397.2
(3)
P 		1092
C 1980.9
(2)
P 		1380.9
(-2.8)
P 		1360.9
(-3)
P 		2103.2
(3)
P 		742
avr 1922.3
(1) 		1359.7
(-2.6) 		1291.7
(-3) 		2227.9
(3) 		936

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 673
1 2 3 4 5 6 range
A 1356.4
(-0.9)
P 		1605.5
(1.4)
P 		1117.6
(-3)
P 		1357.7
(-0.9)
P 		1634.6
(1.6)
P 		1790.2
(3)
P 		673
B 1694.9
(3)
P 		1574.1
(1.5)
P 		1316.8
(-1.8)
P 		1398
(-0.8)
P 		1221.6
(-3)
P 		1597.9
(1.8)
P 		473
C 1626.3
(3)
P 		1621.6
(2.5)
P 		1602
(0.5)
P 		1592.2
(-0.6)
P 		1568.9
(-3)
P 		1608.1
(1.1)
P 		57
avr 1559.2
(1) 		1600.4
(1.8) 		1345.5
(-3) 		1449.3
(-1.1) 		1475
(-0.6) 		1665.4
(3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 706.7
(3)
P 		276.2
(-3)
P 		316.1
(-2.4)
P 		319.6
(-2.4)
P 		431
B 588.4
(3)
P 		352.1
(-2)
P 		302.4
(-3)
P 		510.8
(1.4)
P 		286
C 655.7
(3)
P 		397
(-2.2)
P 		474.3
(-0.6)
P 		354.6
(-3)
P 		301
avr 650.3
(3) 		341.8
(-3) 		364.3
(-2.6) 		395
(-2) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 250
(-2.9)
P 		571
(3)
P 		243.4
(-3)
P 		344.3
(-1.2)
P 		493.3
(1.6)
P 		435.9
(0.5)
P 		328
B 589.7
(2.9)
P 		524
(1.4)
P 		319.8
(-3)
P 		370.3
(-1.9)
P 		496.3
(0.8)
P 		595.9
(3)
P 		276
C 602.8
(3)
P 		494.8
(0.7)
P 		407.7
(-1.1)
P 		320.2
(-3)
P 		507.7
(1)
P 		538.3
(1.6)
P 		283
avr 480.8
(1.6) 		529.9
(3) 		323.6
(-3) 		344.9
(-2.4) 		499.1
(2.1) 		523.4
(2.8) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7956
Sequence Type Exemplar sequence
Representative Public ID F56C9.10 NCBI
Target Description F56C9.10 /REP_DB=WormBase Gene ID /WP=CE01320 /TR=Q20869 /GB=AAK18965.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171882(11), NM_171190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171882 NCBI Caenorhabditis elegans F56C9.10b (F56C9.10) mRNA, complete cds. 11/11 None
NM_171190 NCBI Caenorhabditis elegans F56C9.10a (F56C9.10) mRNA, complete cds. 11/11 None
SNAP00000032858 ENSEMBL cdna:SNAP chromosome:CEL140:III:7330147:7335039:-1 11/11 None
GENEFINDER00000032863 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7330147:7335039:-1 11/11 None
F56C9.10b.2 ENSEMBL cdna:known chromosome:CEL140:III:7329180:7335039:-1 gene:F56C9.10 11/11 A 
F56C9.10b.1 ENSEMBL cdna:known chromosome:CEL140:III:7329642:7335039:-1 gene:F56C9.10 11/11 A 
F56C9.10a ENSEMBL cdna:known chromosome:CEL140:III:7330147:7335050:-1 gene:F56C9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7330144-7335037(-) 98.32 100.0
Public Domain and Genome References
Ensembl F56C9.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM48535 Hypothetical protein F56C9.10b [Caenorhabditis elegans] ref|NP_741223.1| F56C9.10b [Caenorhabditis elegans] 0.0
blast AAK18965 Hypothetical protein F56C9.10a [Caenorhabditis elegans] ref|NP_741222.1| F56C9.10a [Caenorhabditis elegans] 0.0
blast CAE57618 Hypothetical protein CBG00600 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185911_AT
gaaacacgaacgtatctaccaccacaccgttggatttggcaaggaccacagttcgagttg
tttgaatatcgagaagatgatcaaccgagtctgatgtctcctggtaataaaggatccaat
gcttcattcaagtcgattccagtccttgttggatctgaggcagtgaatataaccatgaaa
actattcccgctgatgcaacaagaattgaatgcggtagttacacatctgccaactcgtac
agcatcgatcaaggatctgatcaaccagtaattggtggatatagtagtgccacaaatgga
gattacattgcctcaattgctgatgctatgcgtgatatttcaagtgatgacgacagcacg
aaaaagaagtctccaaaaaatgatgatcttattgaagaatttttcgacaccgaatcgtca
actccatttgctcgaaacggttctggatcatcgtcttccactggagccactggcggcaaa
tctttgaaaaagaagaagacaccaccagcgtctgcccctctaccaacatcttccacaaaa
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACACGAACGTATCTACCACCAC 87 357 2470 Antisense
CTACCACCACACCGTTGGATTTGGC 7 225 2485 Antisense
CAACCGAGTCTGATGTCTCCTGGTA 584 185 2551 Antisense
GCTTCATTCAAGTCGATTCCAGTCC 593 305 2590 Antisense
TGAAAACTATTCCCGCTGATGCAAC 539 571 2645 Antisense
ATGCGGTAGTTACACATCTGCCAAC 655 41 2679 Antisense
ATCTGCCAACTCGTACAGCATCGAT 687 33 2694 Antisense
GAATCGTCAACTCCATTTGCTCGAA 566 329 2881 Antisense
AAACGGTTCTGGATCATCGTCTTCC 68 125 2904 Antisense
GGAGCCACTGGCGGCAAATCTTTGA 76 523 2932 Antisense
TCTACCAACATCTTCCACAAAATCA 605 613 2988 Antisense
Sequence Source Affymetrix Proprietary Database