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[185910_at]

Description CTEL54X.1 /REP_DB=WormBase Gene ID /WP=CE20619 /TR=Q9XXA5 /GB=CAA20224.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 61      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 71      6grp_total > 61      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 230.4
(-0.7)
P 		269.7
(1.5)
P 		295.5
(3)
P 		189.2
(-3)
P 		106
B 271.2
(0.5)
P 		283.3
(0.8)
P 		374.2
(3)
P 		124.7
(-3)
P 		250
C 243.7
(-3)
P 		339.2
(0.4)
P 		414
(3)
P 		254.8
(-2.6)
P 		170
avr 248.4
(-0.9) 		297.4
(0.8) 		361.2
(3) 		189.6
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 195.9
(-2.8)
P 		339.5
(-0.5)
P 		489.8
(1.9)
P 		556.9
(3)
P 		206.9
(-2.6)
P 		182.1
(-3)
P 		375
B 213
(-2.4)
P 		328
(-0.9)
P 		615.1
(3)
P 		452.9
(0.8)
P 		280.4
(-1.5)
P 		168.3
(-3)
P 		447
C 230.4
(-3)
P 		321.7
(-1.3)
P 		443.9
(1)
P 		550.1
(3)
P 		296
(-1.7)
P 		229.1
(-3)
P 		321
avr 213.1
(-2.6) 		329.7
(-0.5) 		516.3
(2.9) 		520
(3) 		261.1
(-1.8) 		193.2
(-3) 		327
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 83.9
(3)
P 		58.5
(0.3)
P 		77.2
(2.3)
P 		27.7
(-3)
P 		56
B 86.5
(3)
P 		70
(1.3)
P 		86.7
(3)
P 		26.6
(-3)
P 		60
C 80.7
(-0.8)
P 		97.5
(0.2)
P 		144.3
(3)
P 		43
(-3)
P 		101
avr 83.7
(1.4) 		75.3
(0.7) 		102.7
(3) 		32.4
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 36.1
(-3)
P 		120.7
(1.8)
P 		106.7
(1)
P 		141.2
(3)
P 		62.4
(-1.5)
P 		44.3
(-2.5)
P 		105
B 74.1
(-2.2)
P 		109.2
(0.2)
P 		149.4
(3)
P 		120
(1)
P 		113.9
(0.5)
P 		62.8
(-3)
P 		87
C 85.4
(-1.6)
P 		98.1
(0.5)
P 		113
(3)
P 		110.6
(2.6)
P 		95.8
(0.2)
P 		76.7
(-3)
P 		36
avr 65.2
(-2.6) 		109.3
(1.6) 		123
(2.9) 		123.9
(3) 		90.7
(-0.2) 		61.3
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185910_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8127
Sequence Type Exemplar sequence
Representative Public ID CTEL54X.1 NCBI
Target Description CTEL54X.1 /REP_DB=WormBase Gene ID /WP=CE20619 /TR=Q9XXA5 /GB=CAA20224.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064723 NCBI Caenorhabditis elegans cTel54X.1 (cTel54X.1) mRNA, complete cds. 11/11 None
GENEFINDER00000015571 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1011:2917:-1 11/11 None
SNAP00000015568 ENSEMBL cdna:SNAP chromosome:CEL140:III:1271:2917:-1 11/11 None
cTel54X.1 ENSEMBL cdna:known chromosome:CEL140:III:1271:2917:-1 gene:cTel54X.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1270-2917(-) 97.77 100.0
Public Domain and Genome References
Gene Title
Ensembl cTel54X.1
Entrez Gene 183881 Entrez gene
SwissProt Q9XXA5 EMBL-EBI
WormBase CE20619 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20224 Hypothetical protein cTel54X.1 [Caenorhabditis elegans] ref|NP_497124.1| cTel54X.1 [Caenorhabditis elegans] 0.0
blast CAA20224 Hypothetical protein cTel54X.1 [Caenorhabditis elegans] ref|NP_497124.1| cTel54X.1 [Caenorhabditis elegans] 1.0E-168
blast AAC68928 Hypothetical protein T12B5.2 [Caenorhabditis elegans] ref|NP_497305.1| T12B5.2 [Caenorhabditis elegans] 2.0E-51
blast AAC68928 Hypothetical protein T12B5.2 [Caenorhabditis elegans] ref|NP_497305.1| T12B5.2 [Caenorhabditis elegans] 2.0E-49
blast CAB03489 Hypothetical protein ZC47.4 [Caenorhabditis elegans] ref|NP_497367.1| ZC47.4 [Caenorhabditis elegans] 7.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-59
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-8
Sequence
Target Sequence 
>C. ELEGANS:185910_AT
acaagaccttaacgttaccacatattttctgaacatcctcagatctaagcaatgcattca
tgtgaaggaattatcgattatttttgtgtcacccaatgatattatatctacgctgcccta
tttcgattctcaagagttgaaaagtattgaattgtggtgccttgaaacaatcgatgactt
tgagcagcttactcggatggatcagtggaaaaaatcaaaagaatgtaaagtttttggtca
ttatttcaacattattccaattcactatttattccactttgaaaacatcgaggccactgt
cgaatacttctcagcactaaatgccttaaatattagaaataaccttttgggaagaagtac
attccaacaatgcatcttctggatctacggtaccatctcagttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGACCTTAACGTTACCACATAT 270 113 468 Antisense
GAACATCCTCAGATCTAAGCAATGC 100 351 498 Antisense
ATCGATTATTTTTGTGTCACCCAAT 572 35 540 Antisense
ATGATATTATATCTACGCTGCCCTA 195 47 563 Antisense
CTGCCCTATTTCGATTCTCAAGAGT 268 237 580 Antisense
AATCGATGACTTTGAGCAGCTTACT 285 169 636 Antisense
GCAGCTTACTCGGATGGATCAGTGG 63 315 651 Antisense
TCCAATTCACTATTTATTCCACTTT 199 587 723 Antisense
GCCACTGTCGAATACTTCTCAGCAC 629 279 760 Antisense
ACAATGCATCTTCTGGATCTACGGT 190 115 834 Antisense
GATCTACGGTACCATCTCAGTTGAA 231 419 849 Antisense
Sequence Source Affymetrix Proprietary Database