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[185908_at]

Description Y44E3A.4 /REP_DB=WormBase Gene ID /WP=CE21929 /TR=Q9TXY9 /GB=AAC78229.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 90      6grp_total > 37      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 226.6
(3)
P 		222.7
(2.6)
P 		166.4
(-3)
P 		202.3
(0.6)
P 		60
B 197.9
(-0.3)
P 		251.1
(3)
P 		235.1
(2)
P 		154.1
(-3)
P 		97
C 230.7
(3)
P 		225.1
(0)
P 		223.9
(-0.6)
P 		219.5
(-3)
P 		11
avr 218.4
(0.9) 		233
(3) 		208.5
(-0.6) 		192
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 252.1
(3)
P 		142.4
(-2)
P 		120.7
(-3)
P 		122.6
(-2.9)
P 		191.9
(0.3)
P 		148.5
(-1.7)
P 		131
B 167.2
(1)
P 		183.9
(2)
P 		123
(-1.7)
P 		141.1
(-0.6)
P 		101.1
(-3)
P 		199.9
(3)
P 		99
C 181
(0.9)
P 		208.3
(3)
P 		139.4
(-2.4)
P 		197.4
(2.2)
P 		131.2
(-3)
P 		201.1
(2.4)
P 		77
avr 200.1
(3) 		178.2
(1.2) 		127.7
(-3) 		153.7
(-0.8) 		141.4
(-1.9) 		183.2
(1.6) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 82.5
(3)
P 		48.3
(-0.9)
P 		43.5
(-1.4)
P 		29.6
(-3)
P 		53
B 63.1
(3)
P 		62
(2.8)
P 		54.5
(1.3)
P 		32.8
(-3)
P 		30
C 76.4
(2.8)
P 		64.7
(1.1)
P 		78
(3)
P 		37
(-3)
P 		41
avr 74
(3) 		58.3
(0.7) 		58.7
(0.8) 		33.1
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 46.5
(0.8)
P 		50.6
(1.6)
P 		26.3
(-3)
P 		31.1
(-2.1)
P 		57.9
(3)
P 		36.1
(-1.1)
P 		32
B 58.2
(0.8)
P 		61.2
(1.2)
P 		29.9
(-3)
P 		37.4
(-2)
P 		41.1
(-1.5)
P 		74.6
(3)
P 		45
C 67.1
(3)
P 		63.6
(2.3)
P 		35.5
(-3)
P 		39.7
(-2.2)
P 		42.5
(-1.7)
P 		67.3
(3)
P 		32
avr 57.3
(2.6) 		58.5
(2.8) 		30.6
(-3) 		36.1
(-1.9) 		47.2
(0.5) 		59.3
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185908_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.311
Sequence Type Exemplar sequence
Representative Public ID Y44E3A.4 NCBI
Target Description Y44E3A.4 /REP_DB=WormBase Gene ID /WP=CE21929 /TR=Q9TXY9 /GB=AAC78229.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058742
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005139 ENSEMBL cdna:SNAP chromosome:CEL140:I:3319854:3332582:-1 11/11 None
GENEFINDER00000005141 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3319854:3330955:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058742 7/11 Cross Hyb Matching Probes None
Y44E3A.4 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3319853-3323964(-) 97.69 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491143 Y44E3A.4 [Caenorhabditis elegans] gb|AAT81179.1| Hypothetical protein Y44E3A.4 [Caenorhabditis elegans] 0.0
blast T33845 hypothetical protein Y44E3A.5 - Caenorhabditis elegans 1.0E-113
blast CAE68985 Hypothetical protein CBG14969 [Caenorhabditis briggsae] 2.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 6.8E-18
Pfam IPR001452 EMBL-EBI SH3 2.8E-12
Pfam IPR001452 EMBL-EBI SH3 6.8E-18
Pfam IPR001452 EMBL-EBI SH3 2.8E-12
Sequence
Target Sequence 
>C. ELEGANS:185908_AT
gtgaatcaactaccggagagccatcaatcgataattcagccactgatcaggtcgccgaac
tgcagcatatcaccaaaaatcgggctcgtcctccgaagaatcggcctatgagcatggtca
tgaaccgtaatcggtcatctgatgaatctccaaatggacgactaagctctccaacttcaa
tttctacagtcaatccaatgtctgcatcaatgtttgtcccagcaactgccaaagaaattt
cgattccatcaaatagcagtgccacgtcatcaccattcaagagctcttcaattgctccgc
catcttctgcatcaaaaccggcacttcgtcccattccaagtaattcgttggctgatgatt
ccacttcctccacctctgcaatcagaaaattggcatctccagatagtcaaaaatcgccaa
atcttccgccatcagactatgtcagccgtgccgaatacgatgcccttctcgatagattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAATCAACTACCGGAGAGCCATC 462 481 611 Antisense
TCGCCGAACTGCAGCATATCACCAA 660 599 662 Antisense
ATCACCAAAAATCGGGCTCGTCCTC 264 29 679 Antisense
GACTAAGCTCTCCAACTTCAATTTC 452 373 770 Antisense
GTCTGCATCAATGTTTGTCCCAGCA 616 471 810 Antisense
CACGTCATCACCATTCAAGAGCTCT 304 199 873 Antisense
TTCGTCCCATTCCAAGTAATTCGTT 654 687 935 Antisense
TCGTTGGCTGATGATTCCACTTCCT 307 603 955 Antisense
CAAATCTTCCGCCATCAGACTATGT 527 193 1028 Antisense
ATGTCAGCCGTGCCGAATACGATGC 176 49 1049 Antisense
TACGATGCCCTTCTCGATAGATTCC 90 647 1066 Antisense
Sequence Source Affymetrix Proprietary Database