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[185907_s_at]

Description Y44E3A.6 /REP_DB=WormBase Gene ID /WP=CE21931 /TR=Q9TXZ2 /GB=AAC78232.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 74      6grp_total > 27      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 477
1 2 3 4 range
A 751.8
(3)
P 		575.4
(-0.1)
P 		636.1
(0.9)
P 		415.4
(-3)
P 		336
B 771.2
(3)
P 		551.8
(-0.1)
P 		660.2
(1.4)
P 		341.8
(-3)
P 		429
C 810.8
(3)
P 		586.1
(0.2)
P 		674
(1.3)
P 		333.7
(-3)
P 		477
avr 777.9
(3) 		571.1
(0) 		656.8
(1.2) 		363.6
(-3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 434
1 2 3 4 5 6 range
A 641.9
(0.6)
P 		732.8
(3)
P 		612.6
(-0.2)
P 		508.9
(-3)
P 		601.2
(-0.5)
P 		660
(1)
P 		224
B 942.4
(3)
P 		617.6
(-1.6)
P 		563
(-2.4)
P 		587.1
(-2)
P 		520.2
(-3)
P 		696.8
(-0.5)
P 		422
C 716.7
(3)
P 		579.3
(-2.9)
P 		650.7
(0.1)
P 		649.5
(0.1)
P 		599.9
(-2)
P 		577.9
(-3)
P 		139
avr 767
(3) 		643.2
(-0.8) 		608.8
(-1.9) 		581.8
(-2.8) 		573.8
(-3) 		644.9
(-0.8) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 273.7
(3)
P 		124.9
(-1.2)
P 		166.3
(-0)
P 		60.8
(-3)
P 		213
B 245.9
(3)
P 		136.3
(-0.8)
P 		153
(-0.2)
P 		72.8
(-3)
P 		173
C 268.4
(3)
P 		168.5
(0.2)
P 		234.9
(2.1)
P 		56.3
(-3)
P 		212
avr 262.7
(3) 		143.2
(-0.6) 		184.7
(0.7) 		63.3
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 118.3
(-3)
P 		260.6
(3)
P 		133.4
(-2.4)
P 		129.1
(-2.5)
P 		181.4
(-0.3)
P 		160.7
(-1.2)
P 		142
B 327.9
(3)
P 		205.6
(-0.8)
P 		136.7
(-3)
P 		155.5
(-2.4)
P 		211.3
(-0.7)
P 		259.8
(0.9)
P 		191
C 265.6
(3)
P 		176.8
(-0.9)
P 		165.6
(-1.4)
P 		130.6
(-3)
P 		194.1
(-0.2)
P 		193.4
(-0.2)
P 		135
avr 237.3
(3) 		214.3
(1.6) 		145.2
(-2.6) 		138.4
(-3) 		195.6
(0.5) 		204.6
(1) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185907_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.300
Sequence Type Exemplar sequence
Representative Public ID Y44E3A.6 NCBI
Target Description Y44E3A.6 /REP_DB=WormBase Gene ID /WP=CE21931 /TR=Q9TXZ2 /GB=AAC78232.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170842(10), NM_171835(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170842 NCBI Caenorhabditis elegans Y44E3A.6a (Y44E3A.6) mRNA, complete cds. 10/11 None
NM_171835 NCBI Caenorhabditis elegans Y44E3A.6b (Y44E3A.6) mRNA, complete cds. 10/11 None
Y44E3A.6a ENSEMBL cdna:known chromosome:CEL140:I:3340227:3349892:-1 gene:Y44E3A.6 10/11 None
Y44E3A.6b ENSEMBL cdna:known chromosome:CEL140:I:3340278:3349901:-1 gene:Y44E3A.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3340559-3350544(-) 98.5 100.0
Public Domain and Genome References
Ensembl Y44E3A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740827 Y44E3A.6a [Caenorhabditis elegans] gb|AAN73852.1| Hypothetical protein Y44E3A.6a [Caenorhabditis elegans] 0.0
blast NP_740828 Y44E3A.6b [Caenorhabditis elegans] gb|AAN73853.1| Hypothetical protein Y44E3A.6b [Caenorhabditis elegans] 0.0
blast T33847 hypothetical protein Y44E3A.6 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:185907_S_AT
gaactggaacgaattgcccttcttcgaatgattgaaacaaatccagaagaagccgtcgaa
gcagctctcaacaaggccgatatgagcattctcgaatttgtatgctcgaaaatcaatccg
gaaaagattgtgattcccggaaatacgaaactgagccaaaagtgcctcgtttcgttggtt
tctcaatttactgccacacttagcagtgatcgtgatctgaaattcaagtggatcgagcta
gtgatcccggaaattgatatgagtgatccggagattattcatgtggtcacgccggttgca
cagaagcttgtgaatgctctccaggataccccgaaaaatgctgaaataatttttcaaata
actgaaaaattgagagaaaaaagatttttaatttttattcaaaaaaatcgcttaaaaaag
cggccaattttaataatttcgaacgaaataacacaaaaattcgatttcactaaactaatg
gagaacacagccgacgagcctgtccgccgttatgtccgacttctctaccaaatgacacgt
tcctcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGGAACGAATTGCCCTTCTTC 560 347 2191 Antisense
GCCGTCGAAGCAGCTCTCAACAAGG 150 285 2242 Antisense
CTGAGCCAAAAGTGCCTCGTTTCGT 163 237 2341 Antisense
TTCTCAATTTACTGCCACACTTAGC 182 691 2370 Antisense
ATCGAGCTAGTGATCCCGGAAATTG 268 35 2422 Antisense
GATTATTCATGTGGTCACGCCGGTT 281 429 2463 Antisense
TCACGCCGGTTGCACAGAAGCTTGT 318 625 2477 Antisense
GCTTGTGAATGCTCTCCAGGATACC 609 305 2496 Antisense
AATGGAGAACACAGCCGACGAGCCT 645 161 2667 Antisense
ATGTCCGACTTCTCTACCAAATGAC 408 47 2702 Antisense
TCTACCAAATGACACGTTCCTCACT 158 611 2714 Antisense
Sequence Source Affymetrix Proprietary Database