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[185904_s_at]

Description Y71F9B.8 /REP_DB=WormBase Gene ID /WP=CE25571 /TR=Q9N4G6 /GB=AAF36020.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 14      4grp_high_8_8 > 59      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 53      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 254.5
(3)
P 		244.3
(2.3)
P 		169.4
(-3)
M 		225.8
(1)
A 		85
B 252.6
(1.7)
P 		278
(3)
P 		270.6
(2.6)
P 		161.5
(-3)
A 		117
C 282.2
(3)
P 		214.8
(-0.7)
P 		253.2
(1.4)
P 		172.3
(-3)
P 		110
avr 263.1
(3) 		245.7
(1.6) 		231.1
(0.5) 		186.5
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 310.2
(3)
P 		289.5
(2.1)
P 		205.2
(-1.8)
P 		240.1
(-0.2)
P 		230.9
(-0.6)
P 		178.8
(-3)
P 		131
B 288.4
(2.5)
P 		300.5
(3)
P 		224.5
(0.1)
P 		168.1
(-2)
P 		190.3
(-1.2)
P 		141.3
(-3)
P 		159
C 350.3
(3)
P 		305.2
(1.9)
P 		223.2
(-0.2)
P 		211.8
(-0.4)
P 		239.1
(0.2)
P 		109.3
(-3)
P 		241
avr 316.3
(3) 		298.4
(2.4) 		217.6
(-0.4) 		206.7
(-0.8) 		220.1
(-0.3) 		143.1
(-3) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 92.7
(3)
P 		53
(-1)
P 		44.3
(-1.9)
M 		33.1
(-3)
A 		60
B 80.5
(3)
P 		68.7
(1.5)
P 		62.7
(0.7)
P 		34.4
(-3)
A 		46
C 93.4
(3)
P 		61.8
(0.1)
P 		88.2
(2.5)
P 		29
(-3)
P 		64
avr 88.9
(3) 		61.2
(0.1) 		65.1
(0.5) 		32.2
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 57.2
(-1.6)
P 		103
(3)
P 		44.7
(-2.9)
P 		60.9
(-1.2)
P 		69.7
(-0.4)
P 		43.5
(-3)
P 		60
B 100.3
(3)
P 		100
(3)
P 		54.5
(-1.9)
P 		44.5
(-3)
P 		77.3
(0.5)
P 		52.7
(-2.1)
P 		56
C 129.8
(3)
P 		93.1
(0.6)
P 		56.8
(-1.7)
P 		42.6
(-2.6)
P 		77.4
(-0.4)
P 		36.6
(-3)
P 		93
avr 95.8
(2.7) 		98.7
(3) 		52
(-2.2) 		49.3
(-2.4) 		74.8
(0.4) 		44.3
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185904_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.135
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.8 NCBI
Target Description Y71F9B.8 /REP_DB=WormBase Gene ID /WP=CE25571 /TR=Q9N4G6 /GB=AAF36020.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058634 NCBI Caenorhabditis elegans Y71F9B.8 (Y71F9B.8) mRNA, complete cds. 11/11 None
SNAP00000013307 ENSEMBL cdna:SNAP chromosome:CEL140:I:2735547:2736272:-1 11/11 None
GENEFINDER00000013360 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2735547:2736272:-1 11/11 None
Y71F9B.8 ENSEMBL cdna:known chromosome:CEL140:I:2735346:2742509:-1 gene:Y71F9B.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2735546-2742497(-) 99.94 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.8
Entrez Gene 171837 Entrez gene
SwissProt Q9N4G6 EMBL-EBI
WormBase CE25571 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639235_AT tartan dm
DROSGENOME1:152335_AT tartan dm
Protein Similarities
Method ID Description E-Value
blast AAF36020 Hypothetical protein Y71F9B.8 [Caenorhabditis elegans] ref|NP_491035.1| Y71F9B.8 [Caenorhabditis elegans] gb|AAG50238.1| 1D304 [Caenorhabditis elegans] 0.0
blast CAE60499 Hypothetical protein CBG04117 [Caenorhabditis briggsae] 0.0
blast AAF36020 Hypothetical protein Y71F9B.8 [Caenorhabditis elegans] ref|NP_491035.1| Y71F9B.8 [Caenorhabditis elegans] gb|AAG50238.1| 1D304 [Caenorhabditis elegans] 8.0E-93
blast CAE60499 Hypothetical protein CBG04117 [Caenorhabditis briggsae] 5.0E-73
blast XP_871205 PREDICTED: similar to Carboxypeptidase N subunit 2 precursor (Carboxypeptidase N polypeptide 2) (Carboxypeptidase N 83 kDa chain) (Carboxypeptidase N regulatory subunit) (Carboxypeptidase N large subunit) [Bos taurus] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.13
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0016
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 4.0E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.41
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0037
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.2
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0084
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0029
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.072
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.15
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491035.1 1 410-432
Y71F9B.8 1 410-432
SNAP00000013307 1 109-131
GENEFINDER00000013360 1 109-131
Sequence
Target Sequence 
>C. ELEGANS:185904_S_AT
gaacaacgagctccgttacgtggctccaggaatgctccaatggccgaacattcgcaattt
gcacttggccaacaacgactggcactgctcctgtgatctccgcgtctcaaatctcaaccc
acgagacgacgcgaaatgctcgggacccgaaaacctggccggcgcacctatcaacgaact
gagctcctgcagtattctaggagggctcttgattccattccttttggtgctcttcatcct
tctcctggctctggtgattctggctctagcttgtaagaagtccaagccggtttctctgaa
gaaccgcgcattctacaatgatcaattgattgccgcgttgaactctcacaaggagtactc
cttcgattgtcattcaccgtacacgatgagctccgaggattcccgggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAACGAGCTCCGTTACGTGGCT 173 353 1035 Antisense
TTACGTGGCTCCAGGAATGCTCCAA 497 681 1050 Antisense
AATGCTCCAATGGCCGAACATTCGC 586 165 1065 Antisense
ATTCGCAATTTGCACTTGGCCAACA 348 9 1084 Antisense
GAGACGACGCGAAATGCTCGGGACC 693 391 1157 Antisense
GCGCACCTATCAACGAACTGAGCTC 14 289 1196 Antisense
TGATTCCATTCCTTTTGGTGCTCTT 253 563 1244 Antisense
GTCCAAGCCGGTTTCTCTGAAGAAC 453 477 1314 Antisense
AATTGATTGCCGCGTTGAACTCTCA 203 179 1358 Antisense
CTTCGATTGTCATTCACCGTACACG 536 219 1395 Antisense
TGAGCTCCGAGGATTCCCGGGATTC 298 569 1421 Antisense
Sequence Source Affymetrix Proprietary Database