[Home] | [Total List]

[185903_at]

Description Y46G5A.15 /REP_DB=WormBase Gene ID /WP=CE24290 /TR=Q9U2F3 /GB=CAB60358.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 10.2
(-2.3)
A 		20.1
(-0.6)
A 		5.7
(-3)
A 		42.2
(3)
A 		37
B 16.2
(-2)
A 		8.7
(-3)
A 		14.5
(-2.3)
A 		55.5
(3)
A 		47
C 7.3
(-3)
A 		12.9
(-2.5)
A 		40.8
(0.2)
A 		69.8
(3)
A 		63
avr 11.2
(-3) 		13.9
(-2.6) 		20.3
(-1.8) 		55.8
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 12.9
(-2.7)
A 		40.9
(-0.4)
A 		64.9
(1.6)
A 		82.3
(3)
A 		36.1
(-0.8)
A 		9.3
(-3)
A 		73
B 45.3
(3)
A 		41.2
(2.3)
A 		15.1
(-2.2)
A 		10.3
(-3)
A 		37.8
(1.7)
A 		34.3
(1.1)
A 		35
C 10.6
(-3)
A 		44.4
(-1)
A 		68.5
(0.4)
A 		112.5
(3)
A 		10.5
(-3)
A 		49.1
(-0.7)
A 		102
avr 22.9
(-3) 		42.2
(-0.5) 		49.5
(0.5) 		68.4
(3) 		28.1
(-2.3) 		30.9
(-1.9) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.7
(-0.2)
A 		4.4
(0.7)
A 		1.5
(-3)
A 		6.2
(3)
A 		5
B 5.2
(-1.1)
A 		2.1
(-3)
A 		3.3
(-2.3)
A 		11.8
(3)
A 		10
C 2.4
(-3)
A 		3.7
(-2.3)
A 		14.2
(3)
A 		11.8
(1.8)
A 		12
avr 3.8
(-2.6) 		3.4
(-3) 		6.3
(-0.3) 		9.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.4
(-3)
A 		14.5
(0.9)
A 		14.1
(0.8)
A 		20.9
(3)
A 		10.9
(-0.2)
A 		2.3
(-3)
A 		19
B 15.8
(3)
A 		13.7
(2)
A 		3.7
(-2.5)
A 		2.7
(-3)
A 		15.4
(2.8)
A 		12.8
(1.6)
A 		13
C 3.9
(-2.8)
A 		13.6
(0.2)
A 		17.4
(1.4)
A 		22.6
(3)
A 		3.4
(-3)
A 		16.5
(1.1)
A 		19
avr 7.4
(-3) 		13.9
(1.9) 		11.7
(0.2) 		15.4
(3) 		9.9
(-1.1) 		10.5
(-0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185903_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3664
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.15 NCBI
Target Description Y46G5A.15 /REP_DB=WormBase Gene ID /WP=CE24290 /TR=Q9U2F3 /GB=CAB60358.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064319(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064319 NCBI Caenorhabditis elegans Y46G5A.15 (Y46G5A.15) mRNA, complete cds. 10/11 None
SNAP00000038995 ENSEMBL cdna:SNAP chromosome:CEL140:II:12781003:12785265:-1 10/11 None
GENEFINDER00000039030 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12782891:12785302:-1 10/11 None
Y46G5A.15 ENSEMBL cdna:known chromosome:CEL140:II:12782913:12785302:-1 gene:Y46G5A.15 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12782887-12785299(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.15
Entrez Gene 174911 Entrez gene
SwissProt Q9U2F3 EMBL-EBI
WormBase CE35666 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60358 Hypothetical protein Y46G5A.15 [Caenorhabditis elegans] ref|NP_496720.2| Y46G5A.15 [Caenorhabditis elegans] 1.0E-116
blast CAB60358 Hypothetical protein Y46G5A.15 [Caenorhabditis elegans] ref|NP_496720.2| Y46G5A.15 [Caenorhabditis elegans] 1.0E-109
blast CAB60358 Hypothetical protein Y46G5A.15 [Caenorhabditis elegans] ref|NP_496720.2| Y46G5A.15 [Caenorhabditis elegans] 4.0E-70
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039030 1 50-67
Sequence
Target Sequence 
>C. ELEGANS:185903_AT
atgcccacggagacggtggagccagttactaatggtagatcaaacgaaaatattcttctc
aagtttcctccaatttcagaaactgagccagaagttgcaaactccacttttgagcaacaa
aagagagagctcactcgtgagctggaagacttggaactagcgaaactcagagcccaaatc
caccacgagaaagctcttatggagattgaggaagaggaaagaaagacaaagcttgagttg
aagaaaaagtcgctggaatttgtgcagaaagagttgcagctgaaagtggaagcttctgca
ctgaaagattcagagatcaagctggcaaggatggaggctcagaagatggctcgacgatat
gaggacgcgtacattgaagacgaagaaataactctgaatccacaatcaactccggaacct
cttgaaaaaaagtccatctcgactagtcgccagcgaaaccaggtttatgggcaatctgga
aacttttttaaacttactatttcagattgctatcaaacgcgagccggtagagacgtcagc
aag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCCACGGAGACGGTGGAGCCAG 262 41 412 Antisense
AATATTCTTCTCAAGTTTCCTCCAA 123 175 460 Antisense
GAAGTTGCAAACTCCACTTTTGAGC 194 337 502 Antisense
CTCACTCGTGAGCTGGAAGACTTGG 254 227 541 Antisense
GGAACTAGCGAAACTCAGAGCCCAA 598 529 564 Antisense
CCCAAATCCACCACGAGAAAGCTCT 600 257 584 Antisense
AGGCTCAGAAGATGGCTCGACGATA 72 53 746 Antisense
CAATCAACTCCGGAACCTCTTGAAA 560 181 814 Antisense
CCATCTCGACTAGTCGCCAGCGAAA 543 271 845 Antisense
AGATTGCTATCAAACGCGAGCCGGT 247 65 915 Antisense
GCGAGCCGGTAGAGACGTCAGCAAG 169 287 930 Antisense
Sequence Source Affymetrix Proprietary Database