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[185902_at]

Description F21C10.9 /REP_DB=WormBase Gene ID /WP=CE07124 /TR=Q19661 /GB=AAA97971.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 42      6grp_total > 41      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 186.6
(-0.2)
P 		320.3
(3)
P 		288.5
(2.2)
P 		67.7
(-3)
P 		253
B 206.8
(-0.8)
P 		432.6
(3)
P 		366.1
(1.9)
P 		77.1
(-3)
P 		356
C 180.8
(-2.2)
P 		379.7
(1.8)
P 		439.9
(3)
P 		141.1
(-3)
P 		299
avr 191.4
(-1) 		377.5
(3) 		364.8
(2.7) 		95.3
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 832
1 2 3 4 5 6 range
A 727.9
(0)
P 		707.1
(-0.1)
P 		1140.4
(3)
P 		747.4
(0.2)
P 		515.4
(-1.5)
P 		308
(-3)
P 		832
B 613.5
(-1.3)
P 		873.2
(1.1)
P 		1086.4
(3)
P 		893.6
(1.3)
P 		423.1
(-3)
P 		435.7
(-2.9)
P 		663
C 657.8
(-0)
P 		830.1
(1.5)
P 		995.7
(3)
P 		923.4
(2.4)
P 		324.4
(-3)
P 		384.6
(-2.5)
P 		671
avr 666.4
(-0.5) 		803.5
(0.7) 		1074.2
(3) 		854.8
(1.1) 		421
(-2.6) 		376.1
(-3) 		698
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 67.9
(2.3)
P 		69.5
(2.5)
P 		75.4
(3)
P 		9.9
(-3)
P 		66
B 66
(0.3)
P 		106.8
(3)
P 		84.8
(1.5)
P 		16.4
(-3)
P 		90
C 59.9
(-1.3)
P 		109.2
(1)
P 		153.3
(3)
P 		23.8
(-3)
P 		130
avr 64.6
(0.3) 		95.2
(2.4) 		104.5
(3) 		16.7
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 134.2
(-1)
P 		251.5
(3)
P 		248.4
(2.9)
P 		189.6
(0.9)
P 		155.5
(-0.3)
P 		75
(-3)
P 		177
B 213.5
(-0.6)
P 		290.7
(3)
P 		263.8
(1.7)
P 		236.7
(0.5)
P 		171.9
(-2.6)
P 		162.5
(-3)
P 		128
C 243.8
(2.6)
P 		253.3
(3)
P 		253.4
(3)
P 		185.7
(0.3)
P 		105
(-3)
P 		128.7
(-2)
P 		148
avr 197.2
(0.1) 		265.2
(3) 		255.2
(2.6) 		204
(0.4) 		144.1
(-2.1) 		122.1
(-3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11671
Sequence Type Exemplar sequence
Representative Public ID F21C10.9 NCBI
Target Description F21C10.9 /REP_DB=WormBase Gene ID /WP=CE07124 /TR=Q19661 /GB=AAA97971.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072959(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072959 NCBI Caenorhabditis elegans F21C10.9 (F21C10.9) mRNA, complete cds. 10/11 None
SNAP00000042373 ENSEMBL cdna:SNAP chromosome:CEL140:V:9099881:9101246:-1 10/11 None
GENEFINDER00000042385 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9099881:9101246:-1 10/11 None
F21C10.9 ENSEMBL cdna:known chromosome:CEL140:V:9099708:9101280:-1 gene:F21C10.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9099881-9103721(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C10.9
Entrez Gene 184767 Entrez gene
SwissProt Q19661 EMBL-EBI
WormBase CE37636 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84822 Hypothetical protein F21C10.9 [Caenorhabditis elegans] ref|NP_505360.3| F21C10.9 [Caenorhabditis elegans] 0.0
blast CAE58712 Hypothetical protein CBG01897 [Caenorhabditis briggsae] 2.0E-90
blast CAA87337 Hypothetical protein F36G3.2 [Caenorhabditis elegans] ref|NP_509643.1| F36G3.2 [Caenorhabditis elegans] sp|Q09318|YQY2_CAEEL Hypothetical protein F36G3.2 in chromosome X 2.0E-90
Sequence
Target Sequence 
>C. ELEGANS:185902_AT
gtgctatttgttcaacccattgtggaaacaatggaaaaatttagtggacaccgaaggatg
gacatcagatgacaattcggtcaccgaaatggttccatctcttccgaccacgcgaagtgt
ttttgcagttactaaaacgccagagcggagcatggttggaagtgttgtttggaacgagta
tgatgatatttgttggttaggcttttaccttttggctccagagtatcgtggaaagggcat
cgggtcgatgatctgggctcaagcaatgtctcgtattaggaaagacttggttcttggctt
aagaggagaagataacaatttcaaaatttgccacctttacgcaaattcatcaaacatagc
attttacacaatgaaagtcctttccgaagttatgctcaaaacatatcctgaagctactct
cattttccatcttgttgatactcctgaaggatccttcacagttcttcataaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTATTTGTTCAACCCATTGTGG 455 469 927 Antisense
ACCGAAATGGTTCCATCTCTTCCGA 494 89 1009 Antisense
CTCTTCCGACCACGCGAAGTGTTTT 374 227 1025 Antisense
GCTTTTACCTTTTGGCTCCAGAGTA 540 303 1127 Antisense
GCATCGGGTCGATGATCTGGGCTCA 357 309 1163 Antisense
TGGGCTCAAGCAATGTCTCGTATTA 653 553 1180 Antisense
GCCACCTTTACGCAAATTCATCAAA 277 279 1256 Antisense
GAAAGTCCTTTCCGAAGTTATGCTC 168 361 1299 Antisense
TATCCTGAAGCTACTCTCATTTTCC 196 659 1330 Antisense
TTTTCCATCTTGTTGATACTCCTGA 513 677 1349 Antisense
AGGATCCTTCACAGTTCTTCATAAA 266 57 1374 Antisense
Sequence Source Affymetrix Proprietary Database