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[185901_at] 7TM chemoreceptor, srt family

Description C50H11.5 /REP_DB=WormBase Gene ID /WP=CE08921 /TR=O16476 /GB=AAG23993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 13      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 24.3
(3)
A 		3.8
(-3)
A 		5.8
(-2.4)
A 		12.5
(-0.5)
A 		21
B 18.6
(-0.7)
A 		15.5
(-1.2)
A 		5.3
(-3)
A 		39.9
(3)
A 		35
C 26
(-1.4)
A 		18.3
(-2.2)
A 		11.2
(-3)
A 		65.6
(3)
A 		54
avr 23
(-0.1) 		12.5
(-2) 		7.4
(-3) 		39.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 9.4
(-0.3)
A 		4.2
(-2.1)
A 		19.1
(3)
A 		13.9
(1.2)
A 		17.1
(2.3)
A 		1.5
(-3)
A 		18
B 33
(1.7)
A 		41.4
(3)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		4.2
(-2.6)
A 		3.8
(-2.7)
A 		40
C 6
(-2.2)
A 		23.5
(1.3)
A 		31.8
(3)
A 		3.1
(-2.7)
A 		4.5
(-2.5)
A 		1.8
(-3)
A 		30
avr 16.1
(1) 		23
(3) 		17.7
(1.5) 		6.2
(-1.9) 		8.6
(-1.2) 		2.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.8
(3)
A 		0.8
(-3)
A 		1.5
(-2.5)
A 		1.8
(-2.3)
A 		8
B 5.9
(0.9)
A 		3.8
(-0.9)
A 		1.2
(-3)
A 		8.5
(3)
A 		7
C 8.6
(0.9)
A 		5.3
(-1.8)
A 		3.9
(-3)
A 		11.1
(3)
A 		7
avr 7.8
(3) 		3.3
(-1.8) 		2.2
(-3) 		7.1
(2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.7
(-1.4)
A 		1.5
(-1.6)
A 		4.2
(1.8)
A 		3.5
(0.9)
A 		5.2
(3)
A 		0.4
(-3)
A 		5
B 11.5
(2)
A 		13.8
(3)
A 		0.5
(-3)
A 		0.4
(-3)
A 		1.7
(-2.4)
A 		1.4
(-2.6)
A 		13
C 2.2
(-1.7)
A 		7.2
(2.3)
A 		8.1
(3)
A 		0.6
(-3)
A 		1.5
(-2.3)
A 		0.6
(-3)
A 		8
avr 5.1
(0.9) 		7.5
(3) 		4.3
(0.1) 		1.5
(-2.4) 		2.8
(-1.2) 		0.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185901_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15524
Sequence Type Exemplar sequence
Representative Public ID C50H11.5 NCBI
Target Description C50H11.5 /REP_DB=WormBase Gene ID /WP=CE08921 /TR=O16476 /GB=AAG23993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071439 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-9) (srt-9) mRNA, complete cds. 11/11 None
C50H11.5 ENSEMBL cdna:known chromosome:CEL140:V:3077899:3079127:1 gene:C50H11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043564 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3077898-3079127(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-9
Ensembl C50H11.5
Entrez Gene 183695 Entrez gene
SwissProt O16476 EMBL-EBI
WormBase CE37960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503840 Serpentine Receptor, class T family member (srt-9) [Caenorhabditis elegans] gb|AAG23993.2| Serpentine receptor, class t protein 9 [Caenorhabditis elegans] 0.0
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 1.0E-144
blast NP_504897 Serpentine Receptor, class T family member (srt-6) [Caenorhabditis elegans] gb|AAK72298.1| Serpentine receptor, class t protein 6 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503840.2 7 37-59,71-93,108-130,150-169,200-222,242-264,269-291
C50H11.5 7 37-59,71-93,108-130,150-169,200-222,242-264,269-291
Sequence
Target Sequence 
>C. ELEGANS:185901_AT
gcgagtgtttccttttgtattaatagcactaatcttatacagtttttggttttttttgtt
tgttaaaccggtcgtgttttcggttaaatatagctgttggatgtttaacccgttggtcgg
aaaagaccgagaactctacgtcaataatcccgataccattaacaacattattttagttat
ttgctcatcaacactatatatttatctctcttacaacttactgttcaaattcggctattc
cacttcgacttggctttataaaacaaaactagctgcaggaatttatttgttcatgaggtt
tatctattatacaccaacgttgatcatcctcagtcatatcatatggggatggagcagtgg
atgcatgtgcattgcctatctaacattcaatagaacaattcgaaatttggttataaaaat
tataatacctaaatcgtttcgaatgagctatgggcttcatgttgattttaaagagcactt
ggaaaaaacggaggcagcacacactgttggttccggaatcgtgattgccggtggatgtgt
catc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGTGTTTCCTTTTGTATTAATA 262 289 456 Antisense
GCTGTTGGATGTTTAACCCGTTGGT 430 251 548 Antisense
ACTCTACGTCAATAATCCCGATACC 598 95 588 Antisense
TATTTATCTCTCTTACAACTTACTG 414 661 654 Antisense
ACTGTTCAAATTCGGCTATTCCACT 6 99 675 Antisense
CTATTCCACTTCGACTTGGCTTTAT 677 221 690 Antisense
TACACCAACGTTGATCATCCTCAGT 488 643 765 Antisense
GATCATCCTCAGTCATATCATATGG 204 421 777 Antisense
GGAGGCAGCACACACTGTTGGTTCC 605 515 945 Antisense
TGTTGGTTCCGGAATCGTGATTGCC 126 561 960 Antisense
CGTGATTGCCGGTGGATGTGTCATC 618 243 975 Antisense
Sequence Source Affymetrix Proprietary Database