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[185900_at]

Description F55E10.5 /REP_DB=WormBase Gene ID /WP=CE02785 /TR=Q20837 /GB=AAC46534.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 7.8
(-2.6)
A 		18
(-1.1)
A 		5.3
(-3)
A 		45.1
(3)
A 		40
B 1.5
(-3)
A 		39.7
(3)
A 		2.7
(-2.8)
A 		38.7
(2.8)
A 		38
C 34.2
(0.9)
A 		10.2
(-2.2)
A 		3.7
(-3)
A 		50.3
(3)
A 		47
avr 14.5
(-1.4) 		22.6
(-0.3) 		3.9
(-3) 		44.7
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 19.6
(-0.3)
A 		1.3
(-3)
A 		34.9
(1.9)
A 		42.6
(3)
A 		5.1
(-2.4)
A 		9.7
(-1.8)
A 		41
B 30.9
(3)
A 		16.2
(-0.2)
A 		21.8
(1)
A 		7.3
(-2.1)
A 		3.4
(-3)
A 		16.5
(-0.1)
A 		28
C 17.7
(-0.1)
A 		9.8
(-1.6)
A 		2
(-3)
A 		34.8
(3)
A 		6.5
(-2.2)
A 		2.2
(-3)
A 		33
avr 22.7
(1.6) 		9.1
(-1.9) 		19.6
(0.8) 		28.2
(3) 		5
(-3) 		9.5
(-1.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.8
(-1.4)
A 		3.9
(-0.1)
A 		1.4
(-3)
A 		6.6
(3)
A 		5
B 0.5
(-3)
A 		9.8
(3)
A 		0.6
(-2.9)
A 		8.3
(2)
A 		9
C 11.3
(3)
A 		2.9
(-2)
A 		1.3
(-3)
A 		8.5
(1.3)
A 		10
avr 4.9
(0.4) 		5.5
(0.9) 		1.1
(-3) 		7.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.6
(-1.2)
A 		0.5
(-3)
A 		7.6
(1.1)
A 		10.8
(3)
A 		1.5
(-2.4)
A 		2.4
(-1.9)
A 		10
B 10.7
(3)
A 		5.4
(-0.4)
A 		5.3
(-0.5)
A 		1.9
(-2.7)
A 		1.4
(-3)
A 		6.2
(0.1)
A 		9
C 6.6
(2.6)
A 		3
(-0.7)
A 		0.5
(-3)
A 		7
(3)
A 		2.1
(-1.5)
A 		0.7
(-2.8)
A 		7
avr 7
(3) 		3
(-1.5) 		4.5
(0.2) 		6.6
(2.5) 		1.7
(-3) 		3.1
(-1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185900_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16764
Sequence Type Exemplar sequence
Representative Public ID F55E10.5 NCBI
Target Description F55E10.5 /REP_DB=WormBase Gene ID /WP=CE02785 /TR=Q20837 /GB=AAC46534.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077011 NCBI Caenorhabditis elegans F55E10.5 (F55E10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000011825 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8331286:8337886:-1 11/11 None
F55E10.5 ENSEMBL cdna:known chromosome:CEL140:X:8333185:8337886:-1 gene:F55E10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011815 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8333183-8337885(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55E10.5
Entrez Gene 186314 Entrez gene
SwissProt Q20837 EMBL-EBI
WormBase CE02785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46534 Hypothetical protein F55E10.5 [Caenorhabditis elegans] ref|NP_509412.1| F55E10.5 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509412.1 4 97-114,232-254,325-347,379-401
F55E10.5 4 97-114,232-254,325-347,379-401
GENEFINDER00000011825 4 97-114,232-254,325-347,379-401
Sequence
Target Sequence 
>C. ELEGANS:185900_AT
tcgccgggcatggcatttacgcatctccactaccacttctattccttgcggcgtttatgg
ttgtggtcatcctcattgctcacataatggctccagaagtacaaccaggatacgagaatc
caaattttggtgatggaacactcgttggatacgagctcgaaatgtacggtacggttgacc
cattcgaagaaaatccaatgcaggaccttgctccgggaaatcccgaaatattaccacgtt
cctatgacatttttgcactgtgcagcagtgaaaaagtcaattatgatgttcttcttgcta
ttattcttatttccgtaattgcaatcacgttcatcagacttctctgcgtgatcaacatca
aaaagcaagatgaagccaatgccagttctaacaccggactcaataaaatggcatcaaacc
ccaacgaattgccaaatcttgacgacggtaacatcctcaacattttcattgtcgtaatct
ccgcttttttaatcatttgcatcgttgctccaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCGGGCATGGCATTTACGCATC 669 585 695 Antisense
CTTCTATTCCTTGCGGCGTTTATGG 124 221 730 Antisense
TTATGGTTGTGGTCATCCTCATTGC 637 681 749 Antisense
TGTACGGTACGGTTGACCCATTCGA 210 559 857 Antisense
AAATCCAATGCAGGACCTTGCTCCG 483 119 885 Antisense
GATGTTCTTCTTGCTATTATTCTTA 58 411 979 Antisense
GCAATCACGTTCATCAGACTTCTCT 195 323 1015 Antisense
GACTTCTCTGCGTGATCAACATCAA 620 371 1031 Antisense
ACGGTAACATCCTCAACATTTTCAT 612 95 1139 Antisense
TGTCGTAATCTCCGCTTTTTTAATC 669 555 1164 Antisense
ATCATTTGCATCGTTGCTCCAATCC 227 31 1186 Antisense
Sequence Source Affymetrix Proprietary Database