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[185899_at]

Description Y46G5A.24 /REP_DB=WormBase Gene ID /WP=CE24296 /TR=Q9U2E4 /GB=CAB60367.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 42      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 22.4
(-1)
A 		55.8
(3)
A 		39
(1)
A 		5.4
(-3)
A 		50
B 46.3
(-3)
A 		47.2
(-2.5)
A 		56.3
(3)
A 		51.1
(-0.1)
A 		10
C 40.5
(-3)
A 		73.9
(3)
A 		47.3
(-1.8)
A 		72.9
(2.8)
A 		33
avr 36.4
(-3) 		59
(3) 		47.5
(-0.1) 		43.1
(-1.2) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 125.3
(3)
A 		23.3
(-2.7)
A 		23.6
(-2.6)
A 		19.2
(-2.9)
A 		17.1
(-3)
A 		54.7
(-0.9)
A 		108
B 36.9
(-0.4)
A 		53.1
(1.2)
A 		10.9
(-2.8)
A 		72.2
(3)
A 		38.6
(-0.2)
A 		9.3
(-3)
A 		63
C 67.2
(3)
A 		11.5
(-3)
A 		16.8
(-2.4)
A 		27.2
(-1.3)
A 		18.5
(-2.2)
A 		30.6
(-0.9)
A 		56
avr 76.5
(3) 		29.3
(-1.8) 		17.1
(-3) 		39.5
(-0.7) 		24.7
(-2.2) 		31.5
(-1.5) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 8.2
(0.9)
A 		12.1
(3)
A 		10.2
(2)
A 		0.8
(-3)
A 		11
B 14.8
(3)
A 		11.7
(-1.8)
A 		13
(0.2)
A 		10.9
(-3)
A 		4
C 13.4
(-2.3)
A 		21.2
(3)
A 		16.5
(-0.2)
A 		12.3
(-3)
A 		9
avr 12.1
(0.5) 		15
(3) 		13.2
(1.5) 		8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 23.1
(3)
A 		8.3
(-1.9)
A 		5.1
(-2.9)
A 		4.9
(-3)
A 		5.1
(-2.9)
A 		13.3
(-0.2)
A 		18
B 12.8
(0.7)
A 		17.7
(2.5)
A 		2.6
(-3)
A 		19.1
(3)
A 		15.7
(1.8)
A 		3.5
(-2.7)
A 		17
C 24.9
(3)
A 		3.5
(-3)
A 		4.3
(-2.8)
A 		5.5
(-2.4)
A 		6
(-2.3)
A 		10.2
(-1.1)
A 		21
avr 20.3
(3) 		9.8
(-0.9) 		4
(-3) 		9.8
(-0.9) 		8.9
(-1.2) 		9
(-1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185899_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3611
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.24 NCBI
Target Description Y46G5A.24 /REP_DB=WormBase Gene ID /WP=CE24296 /TR=Q9U2E4 /GB=CAB60367.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064328 NCBI Caenorhabditis elegans Y46G5A.24 (Y46G5A.24) mRNA, complete cds. 11/11 None
SNAP00000039004 ENSEMBL cdna:SNAP chromosome:CEL140:II:12830604:12832570:1 11/11 None
GENEFINDER00000039047 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12830604:12832570:1 11/11 None
Y46G5A.24 ENSEMBL cdna:known chromosome:CEL140:II:12830604:12832570:1 gene:Y46G5A.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12830600-12832567(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.24
Entrez Gene 189959 Entrez gene
SwissProt Q9U2E4 EMBL-EBI
WormBase CE21970 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30629.1.S1_AT similar to Beta,beta-carotene 15,15-monooxygenase (Beta-carotene dioxygenase 1) cfa
CANINE_2:CFAAFFX.30630.1.S1_AT similar to Beta,beta-carotene 15,15-monooxygenase (Beta-carotene dioxygenase 1) cfa
CANINE_2:CFAAFFX.30630.1.S1_S_AT similar to Beta,beta-carotene 15,15-monooxygenase (Beta-carotene dioxygenase 1) cfa
DROSOPHILA_2:1625743_AT neither inactivation nor afterpotential B dm
DROSGENOME1:151945_AT neither inactivation nor afterpotential B dm
CHICKEN:GGA.41.1.S1_AT beta-carotene 15,15'-monooxygenase 1 gga
HG-U133_PLUS_2:220087_AT beta-carotene 15,15'-monooxygenase 1 hs
HG-U133A:220087_AT beta-carotene 15,15'-monooxygenase 1 hs
HG-FOCUS:220087_AT beta-carotene 15,15'-monooxygenase 1 hs
HG-U133A_2:220087_AT beta-carotene 15,15'-monooxygenase 1 hs
U133_X3P:G8393364_3P_AT beta-carotene 15,15'-monooxygenase 1 hs
HG-U95E:71166_AT beta-carotene 15,15'-monooxygenase 1 hs
MOE430A:1449907_AT beta-carotene 15,15'-monooxygenase mm
MOUSE430A_2:1449907_AT beta-carotene 15,15'-monooxygenase mm
MOUSE430_2:1449907_AT beta-carotene 15,15'-monooxygenase mm
RAE230A:1369430_AT beta-carotene 15, 15-dioxygenase rn
RAT230_2:1369430_AT beta-carotene 15, 15-dioxygenase rn
Protein Similarities
Method ID Description E-Value
blast CAB60367 Hypothetical protein Y46G5A.24 [Caenorhabditis elegans] ref|NP_496729.2| Y46G5A.24 [Caenorhabditis elegans] 0.0
blast CAE71494 Hypothetical protein CBG18419 [Caenorhabditis briggsae] 0.0
blast AAC67462 Hypothetical protein F53C3.12 [Caenorhabditis elegans] ref|NP_494694.2| F53C3.12 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004294 EMBL-EBI Retinal pigment epithelial membrane protein 6.0E-51
Pfam IPR004294 EMBL-EBI Retinal pigment epithelial membrane protein 6.1E-16
Sequence
Target Sequence 
>C. ELEGANS:185899_AT
tatgacgcgaaattcctgccatacctcacacgtgtcatagttccaatgtcagtttcaagt
tccgcaaaacctggagacaatctcctcaagtctgtaccctgggcgagtggatgtacatca
attcttcaggatgacggatcgataaggcttacagagagacgggtttgcgagacttccatg
gaattccctcgctatcattgggaaaaaatcaacatgaaagaatatagatacgtcttcgga
tccactgtttttggaagaattgatggaaatctcgctggggttgtcaaagctgacttgaaa
ttcggaaaccacttgatttggaatcgcgagaacccgcatcaaatctgcggggagcccatt
tttgtcccaaatcccgagggcatcgaggaggatgatggaattctgattgttccaattatg
tccagttctgaaaaacaagtcccatttgtgctgattttggacgcaaaaactctagaggaa
acagcaagatttgagattccagaggccagaattccacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGACGCGAAATTCCTGCCATACC 76 657 1096 Antisense
GCCATACCTCACACGTGTCATAGTT 417 281 1113 Antisense
GAGACAATCTCCTCAAGTCTGTACC 379 393 1169 Antisense
AAGTCTGTACCCTGGGCGAGTGGAT 117 157 1183 Antisense
GAGAGACGGGTTTGCGAGACTTCCA 300 395 1249 Antisense
ATGGAATTCCCTCGCTATCATTGGG 365 53 1273 Antisense
GGAAATCTCGCTGGGGTTGTCAAAG 332 527 1360 Antisense
TCGCGAGAACCCGCATCAAATCTGC 377 599 1419 Antisense
TTGTCCCAAATCCCGAGGGCATCGA 34 707 1457 Antisense
TTGTTCCAATTATGTCCAGTTCTGA 652 685 1502 Antisense
TTCCAGAGGCCAGAATTCCACTTGG 44 699 1592 Antisense
Sequence Source Affymetrix Proprietary Database