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[185897_at]

Description T08H10.3 /REP_DB=WormBase Gene ID /WP=CE07476 /TR=Q22349 /GB=AAA97989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 4
(-3)
A 		11.3
(-1.1)
A 		10.5
(-1.3)
A 		27.5
(3)
A 		24
B 2.5
(-3)
A 		39.6
(3)
A 		2.7
(-3)
A 		25.9
(0.8)
A 		37
C 40.7
(-0.7)
A 		2.4
(-3)
A 		1.9
(-3)
A 		102
(3)
M 		100
avr 15.7
(-1.6) 		17.8
(-1.4) 		5
(-3) 		51.8
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 12.9
(-1.9)
A 		28.1
(-0.3)
A 		8.5
(-2.4)
A 		2.5
(-3)
A 		44
(1.4)
A 		58.8
(3)
A 		56
B 1.4
(-3)
A 		2.4
(-2.9)
A 		1.6
(-3)
A 		3.4
(-2.8)
A 		39.1
(1.4)
A 		52.7
(3)
A 		51
C 2.9
(-2.9)
A 		31.1
(1.4)
A 		3.1
(-2.9)
A 		2.3
(-3)
A 		37.2
(2.3)
A 		41.8
(3)
A 		40
avr 5.7
(-2.6) 		20.5
(-0.8) 		4.4
(-2.8) 		2.7
(-3) 		40.1
(1.6) 		51.1
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.5
(-3)
A 		2.4
(-0.8)
A 		2.7
(-0.1)
A 		4
(3)
A 		3
B 0.8
(-2.9)
A 		9.8
(3)
A 		0.6
(-3)
A 		5.5
(0.2)
A 		9
C 13.5
(1.7)
A 		0.7
(-3)
A 		0.7
(-3)
A 		17.2
(3)
M 		17
avr 5.3
(0.2) 		4.3
(-0.6) 		1.3
(-3) 		8.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.4
(-2.2)
A 		10
(1.1)
A 		1.8
(-2.5)
A 		0.6
(-3)
A 		13.3
(2.6)
A 		14.3
(3)
A 		14
B 0.5
(-3)
A 		0.8
(-2.9)
A 		0.4
(-3)
A 		0.9
(-2.8)
A 		15.9
(1.8)
A 		19.7
(3)
A 		19
C 1.1
(-2.7)
A 		9.5
(1)
A 		0.8
(-2.9)
A 		0.5
(-3)
A 		12
(2.1)
A 		14
(3)
A 		14
avr 1.3
(-2.8) 		6.8
(-0.6) 		1
(-2.9) 		0.7
(-3) 		13.7
(2.1) 		16
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15500
Sequence Type Exemplar sequence
Representative Public ID T08H10.3 NCBI
Target Description T08H10.3 /REP_DB=WormBase Gene ID /WP=CE07476 /TR=Q22349 /GB=AAA97989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071828 NCBI Caenorhabditis elegans T08H10.3 (T08H10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000001971 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4471254:4473416:1 11/11 None
T08H10.3 ENSEMBL cdna:known chromosome:CEL140:V:4471193:4473416:1 gene:T08H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4471253-4473416(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08H10.3
Entrez Gene 178843 Entrez gene
SwissProt Q22349 EMBL-EBI
WormBase CE07476 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97989 Hypothetical protein T08H10.3 [Caenorhabditis elegans] ref|NP_504229.1| T08H10.3 [Caenorhabditis elegans] 1.0E-75
blast AAA97989 Hypothetical protein T08H10.3 [Caenorhabditis elegans] ref|NP_504229.1| T08H10.3 [Caenorhabditis elegans] 1.0E-68
blast NP_500694 E03H12.7 [Caenorhabditis elegans] gb|AAC47982.1| Hypothetical protein E03H12.7 [Caenorhabditis elegans] 1.0E-64
blast NP_500694 E03H12.7 [Caenorhabditis elegans] gb|AAC47982.1| Hypothetical protein E03H12.7 [Caenorhabditis elegans] 1.0E-57
blast CAE71231 Hypothetical protein CBG18101 [Caenorhabditis briggsae] 1.0E-38
blast AAY55902 Hypothetical protein ZK1248.20 [Caenorhabditis elegans] ref|NP_001022498.1| ZK1248.20 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504229.1 1 10-27
T08H10.3 1 10-27
GENEFINDER00000001971 1 10-27
Sequence
Target Sequence 
>C. ELEGANS:185897_AT
atgcgatttggagactatttcaatctcgttcagaatctatttctgattttgctcgtcttc
tgtccggcgtggattttgtgcaaaggaaagaaaaaagcaacctatgcatcggtatccaag
cagacgtcttccgccgagccggcaaaatcggcaattaagcctccaataaccgacccaaca
ccgagcgcgatggccaaggtgggctcagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGATTTGGAGACTATTTCAATC 176 37 13 Antisense
TCTATTTCTGATTTTGCTCGTCTTC 380 615 48 Antisense
TCTTCTGTCCGGCGTGGATTTTGTG 15 613 68 Antisense
CTGTCCGGCGTGGATTTTGTGCAAA 6 241 72 Antisense
AAGCAACCTATGCATCGGTATCCAA 609 151 107 Antisense
CGGTATCCAAGCAGACGTCTTCCGC 620 243 122 Antisense
TCTTCCGCCGAGCCGGCAAAATCGG 615 615 139 Antisense
CGCCGAGCCGGCAAAATCGGCAATT 678 255 144 Antisense
GCAATTAAGCCTCCAATAACCGACC 286 323 163 Antisense
AACACCGAGCGCGATGGCCAAGGTG 153 135 189 Antisense
GCGATGGCCAAGGTGGGCTCAGATG 132 291 199 Antisense
Sequence Source Affymetrix Proprietary Database