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[185895_at]

Description Y51A2D.15 /REP_DB=WormBase Gene ID /WP=CE19211 /TR=Q9XXR1 /GB=CAA16402.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 2.8
(-3)
A 		20
(-1.1)
A 		40.8
(1.2)
A 		57.3
(3)
A 		55
B 24.9
(0.4)
A 		34.7
(2.2)
A 		6.2
(-3)
A 		39.1
(3)
A 		33
C 15.8
(-1.2)
A 		17.5
(-0.8)
A 		34.6
(3)
A 		7.9
(-3)
A 		27
avr 14.5
(-3) 		24.1
(-0.2) 		27.2
(0.8) 		34.8
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16.6
(0.7)
A 		25.4
(3)
A 		2.3
(-3)
A 		21.6
(2)
A 		23.5
(2.5)
A 		19.6
(1.5)
A 		23
B 22
(3)
A 		21.3
(2.5)
A 		13.4
(-3)
A 		14.8
(-2)
A 		18.5
(0.6)
A 		18.9
(0.8)
A 		9
C 15.1
(-0.6)
A 		33.1
(3)
A 		3.1
(-3)
A 		5
(-2.6)
A 		22.1
(0.8)
A 		22.4
(0.9)
A 		30
avr 17.9
(0.4) 		26.6
(3) 		6.3
(-3) 		13.8
(-0.8) 		21.4
(1.5) 		20.3
(1.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1
(-3)
A 		4.3
(-1)
A 		10.7
(3)
A 		8.4
(1.6)
A 		10
B 7.9
(2.4)
A 		8.6
(3)
A 		1.4
(-3)
A 		8.3
(2.8)
A 		7
C 5.2
(-0.8)
A 		5
(-0.9)
A 		12
(3)
A 		1.3
(-3)
A 		11
avr 4.7
(-3) 		6
(-0.6) 		8
(3) 		6
(-0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.1
(-1.2)
A 		9
(3)
A 		0.5
(-3)
A 		5.5
(0.5)
A 		7.1
(1.7)
A 		4.8
(0)
A 		9
B 7.7
(3)
A 		7.1
(2.2)
A 		3.2
(-3)
A 		3.9
(-2.1)
A 		7.5
(2.7)
A 		7
(2.1)
A 		5
C 5.6
(0.1)
A 		10.1
(3)
A 		0.8
(-3)
A 		1
(-2.9)
A 		7.1
(1.1)
A 		7.5
(1.3)
A 		9
avr 5.5
(0.3) 		8.7
(3) 		1.5
(-3) 		3.5
(-1.3) 		7.2
(1.8) 		6.4
(1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13546
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.15 NCBI
Target Description Y51A2D.15 /REP_DB=WormBase Gene ID /WP=CE19211 /TR=Q9XXR1 /GB=CAA16402.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075233(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075233 NCBI Caenorhabditis elegans Y51A2D.15 (Y51A2D.15) mRNA, complete cds. 9/11 A 
GENEFINDER00000034268 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18592069:18616518:1 9/11 None
Y51A2D.15 ENSEMBL cdna:known chromosome:CEL140:V:18595373:18614118:1 gene:Y51A2D.15 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18595372-18596460(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2D.15
Entrez Gene 190137 Entrez gene
SwissProt Q9XXR1 EMBL-EBI
WormBase CE32531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.5117.1.S1_S_AT similar to Hook-related protein 1 cfa
CANINE_2:CFAAFFX.5131.1.S1_AT similar to Hook-related protein 1 cfa
DROSOPHILA_2:1626237_AT dm
DROSGENOME1:148086_AT dm
CHICKEN:GGA.14884.1.S1_S_AT similar to hypothetical protein LOC55580 gga
CHICKEN:GGAAFFX.12589.1.S1_S_AT similar to hypothetical protein LOC55580 gga
CHICKEN:GGAAFFX.5084.2.S1_S_AT similar to hypothetical protein LOC55580 gga
Protein Similarities
Method ID Description E-Value
blast CAA16402 Hypothetical protein Y51A2D.15 [Caenorhabditis elegans] ref|NP_507634.2| Y51A2D.15 [Caenorhabditis elegans] 0.0
blast T27075 hypothetical protein Y51A2D.16 - Caenorhabditis elegans 0.0
blast CAE67413 Hypothetical protein CBG12901 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185895_AT
gaaacacgaaaactggagccatccgctggctttttggctgtgcgactgcgcagccataat
tcccaaccctgcaacccaaaattttgccaaaaatgattttttggacgggcttctgatgtt
aaatttgatgaagtttatcaacccacatttttctgaaaatgaaaaaaatggtcagagtct
gtacgaggaattgttgaatcaaatcagccagttttacgagaaaaatttggaccaagttat
agtgtgcaaaatgccggaaatatcgattttggagagctccggtgaaattgatggtgagta
ctttgttaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACACGAAAACTGGAGCCATCCG 88 357 21 Antisense
CTTTTTGGCTGTGCGACTGCGCAGC 92 221 50 Antisense
TGTGCGACTGCGCAGCCATAATTCC 118 557 59 Antisense
GATTTTTTGGACGGGCTTCTGATGT 566 427 115 Antisense
TTGATGAAGTTTATCAACCCACATT 492 705 145 Antisense
GGTCAGAGTCTGTACGAGGAATTGT 214 501 190 Antisense
GAATCAAATCAGCCAGTTTTACGAG 551 325 216 Antisense
AATTTGGACCAAGTTATAGTGTGCA 19 173 244 Antisense
AAATGCCGGAAATATCGATTTTGGA 32 117 269 Antisense
GGAGAGCTCCGGTGAAATTGATGGT 337 517 291 Antisense
AATTGATGGTGAGTACTTTGTTAAA 289 177 306 Antisense
Sequence Source Affymetrix Proprietary Database