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[185894_s_at]

Description Y54G11A.2 /REP_DB=WormBase Gene ID /WP=CE22473 /TR=Q9XW03 /GB=CAA22448.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_total > 85      4grp_total > 41      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 139.4
(-3)
P 		252.1
(2.3)
P 		265.8
(3)
P 		187
(-0.7)
P 		126
B 168.6
(-3)
P 		209.6
(0.6)
P 		237.2
(3)
P 		230.5
(2.4)
P 		69
C 218.3
(-2.7)
P 		287.9
(3)
P 		284
(2.7)
P 		215.1
(-3)
P 		73
avr 175.4
(-3) 		249.9
(2.1) 		262.3
(3) 		210.9
(-0.5) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 169
(-1.2)
A 		150.8
(-3)
A 		191.6
(1)
P 		195
(1.4)
P 		203
(2.2)
P 		211.3
(3)
P 		61
B 148.4
(-3)
P 		167.4
(-1.7)
P 		237.5
(3)
P 		209.5
(1.1)
P 		224.8
(2.1)
P 		218
(1.7)
P 		89
C 162.7
(-1.5)
P 		141.9
(-3)
P 		151.8
(-2.3)
P 		219.3
(2.5)
A 		190.7
(0.5)
M 		226.5
(3)
P 		85
avr 160
(-2.4) 		153.4
(-3) 		193.6
(0.7) 		207.9
(2) 		206.2
(1.9) 		218.6
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 50.7
(0.3)
P 		54.7
(0.9)
P 		69.5
(3)
P 		27.4
(-3)
P 		42
B 53.8
(1.8)
P 		51.8
(-0.3)
P 		55
(3)
P 		49.1
(-3)
P 		6
C 72.3
(0.4)
P 		82.8
(1.4)
P 		99
(3)
P 		36.3
(-3)
P 		63
avr 58.9
(0.5) 		63.1
(1.1) 		74.5
(3) 		37.6
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 31.1
(-3)
A 		53.6
(1.5)
A 		41.7
(-0.9)
P 		49.5
(0.7)
P 		61.2
(3)
P 		51.5
(1.1)
P 		30
B 51.6
(-3)
P 		55.7
(-2.4)
P 		57.7
(-2.1)
P 		55.5
(-2.4)
P 		91.3
(3)
P 		81.3
(1.5)
P 		40
C 60.3
(0.5)
P 		43.3
(-2.2)
P 		38.6
(-3)
P 		44.1
(-2.1)
A 		61.7
(0.7)
M 		75.8
(3)
P 		37
avr 47.7
(-2.6) 		50.9
(-1.8) 		46
(-3) 		49.7
(-2.1) 		71.4
(3) 		69.5
(2.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185894_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3602
Sequence Type Exemplar sequence
Representative Public ID Y54G11A.2 NCBI
Target Description Y54G11A.2 /REP_DB=WormBase Gene ID /WP=CE22473 /TR=Q9XW03 /GB=CAA22448.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064570(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064570 NCBI Caenorhabditis elegans Y54G11A.2 (Y54G11A.2) mRNA, complete cds. 11/11 None
SNAP00000023643 ENSEMBL cdna:SNAP chromosome:CEL140:II:14252251:14258518:1 11/11 None
GENEFINDER00000023689 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14252251:14255244:1 11/11 None
Y54G11A.2 ENSEMBL cdna:known chromosome:CEL140:II:14252251:14255530:1 gene:Y54G11A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14252247-14255241(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G11A.2
Entrez Gene 175082 Entrez gene
SwissProt Q9XW03 EMBL-EBI
WormBase CE22473 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.14942.1.S1_AT similar to coiled-coil domain containing 25 cfa
CANINE_2:CFAAFFX.13314.1.S1_S_AT similar to coiled-coil domain containing 25 cfa
CANINE:1587137_AT similar to coiled-coil domain containing 25 cfa
DROSOPHILA_2:1623109_AT dm
DROSGENOME1:144637_AT dm
HG-U133A:218125_S_AT coiled-coil domain containing 25 hs
HG-U133_PLUS_2:218125_S_AT coiled-coil domain containing 25 hs
HG-U133A_2:218125_S_AT coiled-coil domain containing 25 hs
HU35KSUBA:AA236843_S_AT coiled-coil domain containing 25 hs
HU35KSUBA:AA405937_AT coiled-coil domain containing 25 hs
HU35KSUBB:RC_N21646_AT coiled-coil domain containing 25 hs
U133_X3P:G8922717_3P_A_AT coiled-coil domain containing 25 hs
U133_X3P:HS.72085.0.S1_3P_A_AT coiled-coil domain containing 25 hs
HG-U133_PLUS_2:222525_S_AT coiled-coil domain containing 25 hs
HG-U133B:222525_S_AT coiled-coil domain containing 25 hs
HG-U95B:52953_AT coiled-coil domain containing 25 hs
HG-U95C:64917_AT coiled-coil domain containing 25 hs
HG-U95E:91073_AT coiled-coil domain containing 25 hs
HG-U95E:91075_G_AT coiled-coil domain containing 25 hs
HG-U95B:46044_AT Coiled-coil domain containing 25 hs
HG-U95E:91078_AT Coiled-coil domain containing 25 hs
HU35KSUBA:AA165672_AT Coiled-coil domain containing 25 hs
MOUSE430A_2:1451799_AT Coiled-coil domain containing 25 (Ccdc25), mRNA mm
MOUSE430_2:1451799_AT Coiled-coil domain containing 25 (Ccdc25), mRNA mm
MOE430A:1451799_AT Coiled-coil domain containing 25 (Ccdc25), mRNA mm
RAE230B:1395654_AT Similar to RIKEN cDNA 2610528H13 (predicted) rn
RAT230_2:1395654_AT Similar to RIKEN cDNA 2610528H13 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA22448 Hypothetical protein Y54G11A.2 [Caenorhabditis elegans] ref|NP_496971.1| Y54G11A.2 [Caenorhabditis elegans] 1.0E-106
blast CAE73248 Hypothetical protein CBG20664 [Caenorhabditis briggsae] 5.0E-92
blast CAE73248 Hypothetical protein CBG20664 [Caenorhabditis briggsae] 2.0E-91
blast AAH53297 Coiled-coil domain containing 25 [Danio rerio] ref|NP_956682.1| coiled-coil domain containing 25 [Danio rerio] emb|CAI20930.1| novel protein (zgc:64173) [Danio rerio] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR008532 EMBL-EBI Protein of unknown function DUF814 1.5E-36
Sequence
Target Sequence 
>C. ELEGANS:185894_S_AT
atcaaattctcgtcgaacaccaccaacccgccaaccatgatctacatgggtgtggataag
gtcgaaaatgaggatttgatcaagtacggatggccggaagacgtgtggtttcacgtggac
aagctctcatcagctcacgtctatctccgtttgcacagtggaatgacgatcgactcgatt
ccagaagcattgctcatcgactgctgccagctcgtcaaacaaaactcaatcgaaggctgc
aagctcaacaacgtggcaattgtctacacaatgtggtcaaatcttaaaaaaacgggagat
atggctgtcggacaggtcggatttcacagtcataagcaggtaaagcacacggttgtgccg
acga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAATTCTCGTCGAACACCACCA 597 27 19 Antisense
AACCCGCCAACCATGATCTACATGG 700 145 43 Antisense
GGATGGCCGGAAGACGTGTGGTTTC 407 513 106 Antisense
TGGTTTCACGTGGACAAGCTCTCAT 457 551 124 Antisense
GTCTATCTCCGTTTGCACAGTGGAA 617 469 157 Antisense
CGATCGACTCGATTCCAGAAGCATT 98 249 185 Antisense
TGCTGCCAGCTCGTCAAACAAAACT 139 583 220 Antisense
AAGGCTGCAAGCTCAACAACGTGGC 526 161 251 Antisense
ACGGGAGATATGGCTGTCGGACAGG 664 95 310 Antisense
GTCGGACAGGTCGGATTTCACAGTC 124 471 325 Antisense
GTAAAGCACACGGTTGTGCCGACGA 325 461 358 Antisense
Sequence Source Affymetrix Proprietary Database