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[185893_s_at]

Description M04G12.1A /REP_DB=WormBase Gene ID /WP=CE12422 /TR=P92004 /GB=CAB03208.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 71      6grp_total > 46      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 664
1 2 3 4 range
A 554.4
(0.3)
P 		315
(-3)
P 		573.4
(0.6)
P 		748.2
(3)
P 		433
B 461.3
(-2.6)
P 		422.7
(-3)
P 		428.2
(-2.9)
P 		978.9
(3)
P 		556
C 704.1
(0.9)
P 		349.8
(-3)
P 		436.7
(-2)
P 		894.4
(3)
P 		545
avr 573.3
(-0.5) 		362.5
(-3) 		479.4
(-1.6) 		873.8
(3) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 213.7
(-3)
P 		405.4
(0.7)
P 		292.6
(-1.5)
P 		495.3
(2.4)
P 		226.2
(-2.8)
P 		525.6
(3)
P 		312
B 325.9
(3)
P 		313.1
(1.5)
P 		284.2
(-1.8)
P 		303.9
(0.5)
P 		306.6
(0.8)
P 		273.6
(-3)
P 		52
C 461
(2.6)
P 		352.6
(0)
P 		478.3
(3)
P 		226.6
(-3)
P 		333.1
(-0.5)
P 		269.9
(-2)
P 		252
avr 333.5
(0.9) 		357
(3) 		351.7
(2.5) 		341.9
(1.7) 		288.6
(-3) 		356.4
(2.9) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 201.9
(3)
P 		68.4
(-3)
P 		149.9
(0.7)
P 		109.5
(-1.2)
P 		134
B 147.1
(-0.4)
P 		104.4
(-2.7)
P 		99.2
(-3)
P 		208.6
(3)
P 		109
C 233.1
(3)
P 		100.6
(-3)
P 		152.2
(-0.7)
P 		150.8
(-0.7)
P 		133
avr 194
(3) 		91.1
(-3) 		133.8
(-0.5) 		156.3
(0.8) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 39.4
(-3)
P 		144.2
(3)
P 		63.7
(-1.6)
P 		125.6
(1.9)
P 		68.3
(-1.3)
P 		128
(2.1)
P 		105
B 113.4
(1.8)
P 		104.2
(0.8)
P 		69
(-3)
P 		80.5
(-1.8)
P 		124.5
(3)
P 		102
(0.6)
P 		56
C 170.9
(3)
P 		107.6
(-0)
P 		121.7
(0.6)
P 		45.6
(-3)
P 		107.8
(-0)
P 		90.4
(-0.9)
P 		125
avr 107.9
(1.1) 		118.7
(3) 		84.8
(-2.8) 		83.9
(-3) 		100.2
(-0.2) 		106.8
(0.9) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185893_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13776
Sequence Type Exemplar sequence
Representative Public ID M04G12.1A NCBI
Target Description M04G12.1A /REP_DB=WormBase Gene ID /WP=CE12422 /TR=P92004 /GB=CAB03208.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073916(11), NM_073915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073916 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-260) (tag-260) mRNA, complete cds. 11/11 None
NM_073915 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-260) (tag-260) mRNA, complete cds. 11/11 None
SNAP00000041632 ENSEMBL cdna:SNAP chromosome:CEL140:V:13373145:13375379:-1 10/11 None
GENEFINDER00000041639 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13373145:13375490:-1 11/11 None
M04G12.1a ENSEMBL cdna:known chromosome:CEL140:V:13372706:13375539:-1 gene:M04G12.1 11/11 A 
M04G12.1b ENSEMBL cdna:known chromosome:CEL140:V:13372707:13382781:-1 gene:M04G12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13373144-13375490(-) 100.0 100.0
Public Domain and Genome References
Ensembl M04G12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03208 Hypothetical protein M04G12.1a [Caenorhabditis elegans] ref|NP_506317.2| Temporarily Assigned Gene name family member (tag-260) [Caenorhabditis elegans] 0.0
blast CAB03213 Hypothetical protein M04G12.1b [Caenorhabditis elegans] ref|NP_506316.1| Temporarily Assigned Gene name family member (tag-260) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185893_S_AT
tcatctcttggctccattcatgatgagcatgcttccaagcacaacttattcaaatccaag
aaaacgtgaatctgacgaagagcagaagcctgaaatatatggaaaagtgcagagaggcga
tgcccaaacgacaactgcctcgccaacctcaactcattcaccagaccatccgggagttaa
ggatcggagagggatcgccccaattgagagagttttgagatgtacactgtgcaatgaacg
tctagaagacacccactttgtacaatgcccaacagtcagcattcacaagttttgcttccc
atgctcgcggagcagcatcaaggatcaatgcaagagcagtgatatgtactgcccatcagg
cgataaatgtccattagtcggatcagcaatgccatgggcattcatgcaaggagaaattgc
acaaatcctcggtgacgagtatgacgagttcaagagaacccgagaagctcacggtcttgc
tccaccgatgggtgccaacgcagcgactctcgccgcggcagccgcggcagctgcacagaa
cggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCTCTTGGCTCCATTCATGATG 390 621 684 Antisense
AGGCGATGCCCAAACGACAACTGCC 146 55 798 Antisense
ATTCACCAGACCATCCGGGAGTTAA 8 3 839 Antisense
GGGATCGCCCCAATTGAGAGAGTTT 341 495 874 Antisense
GAAGACACCCACTTTGTACAATGCC 623 339 928 Antisense
GCATTCACAAGTTTTGCTTCCCATG 696 307 962 Antisense
TTCCCATGCTCGCGGAGCAGCATCA 132 693 979 Antisense
GATATGTACTGCCCATCAGGCGATA 508 425 1024 Antisense
GTCGGATCAGCAATGCCATGGGCAT 102 473 1060 Antisense
GAGAACCCGAGAAGCTCACGGTCTT 290 391 1137 Antisense
AGCCGCGGCAGCTGCACAGAACGGC 73 83 1203 Antisense
Sequence Source Affymetrix Proprietary Database