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[185892_at]

Description Y46G5A.13 /REP_DB=WormBase Gene ID /WP=CE21988 /TR=Q9U2F5 /GB=CAB60356.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 126.4
(-0.4)
M 		75.1
(-3)
A 		137.1
(0.1)
A 		194.7
(3)
P 		120
B 122.3
(0.2)
P 		41.2
(-3)
A 		111.3
(-0.2)
A 		192.9
(3)
P 		152
C 110.6
(-3)
P 		158.6
(3)
A 		128.9
(-0.7)
A 		142.4
(1)
P 		48
avr 119.8
(-1) 		91.6
(-3) 		125.8
(-0.6) 		176.7
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 68.1
(-1.1)
A 		92.4
(1.4)
A 		76.2
(-0.2)
A 		55.2
(-2.4)
A 		48.8
(-3)
A 		108.3
(3)
M 		60
B 49.1
(-3)
A 		129.1
(3)
A 		80.9
(-0.6)
A 		63.6
(-1.9)
A 		88.9
(-0)
A 		88.2
(-0.1)
P 		80
C 68.7
(-1.5)
M 		137.6
(3)
A 		86.2
(-0.3)
A 		45.3
(-3)
A 		46
(-3)
A 		72.1
(-1.3)
P 		92
avr 62
(-2.3) 		119.7
(3) 		81.1
(-0.6) 		54.7
(-3) 		61.2
(-2.4) 		89.5
(0.2) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 46
(3)
M 		16.3
(-3)
A 		35.8
(0.9)
A 		28.5
(-0.5)
P 		30
B 39
(2.6)
P 		10.2
(-3)
A 		25.8
(0)
A 		41.1
(3)
P 		31
C 36.6
(0.5)
P 		45.6
(3)
A 		44.9
(2.8)
A 		24
(-3)
P 		22
avr 40.5
(3) 		24
(-3) 		35.5
(1.2) 		31.2
(-0.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 12.6
(-3)
A 		32.9
(3)
A 		16.6
(-1.8)
A 		14
(-2.6)
A 		14.7
(-2.4)
A 		26.4
(1.1)
M 		20
B 17.1
(-3)
A 		43
(3)
A 		19.6
(-2.4)
A 		16.9
(-3)
A 		36.1
(1.4)
A 		32.9
(0.7)
P 		26
C 25.5
(-0)
M 		42
(3)
A 		21.9
(-0.7)
A 		9.1
(-3)
A 		14.9
(-1.9)
A 		24.1
(-0.3)
P 		33
avr 18.4
(-1.8) 		39.3
(3) 		19.4
(-1.6) 		13.3
(-3) 		21.9
(-1) 		27.8
(0.3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185892_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3388
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.13 NCBI
Target Description Y46G5A.13 /REP_DB=WormBase Gene ID /WP=CE21988 /TR=Q9U2F5 /GB=CAB60356.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064317 NCBI Caenorhabditis elegans Y46G5A.13 (Y46G5A.13) mRNA, complete cds. 11/11 None
SNAP00000038993 ENSEMBL cdna:SNAP chromosome:CEL140:II:12768639:12773119:1 11/11 None
GENEFINDER00000039035 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12768639:12773119:1 11/11 None
Y46G5A.13 ENSEMBL cdna:known chromosome:CEL140:II:12768639:12773119:1 gene:Y46G5A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12768635-12773116(+) 89.89 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.13
Entrez Gene 174909 Entrez gene
SwissProt Q9U2F5 EMBL-EBI
WormBase CE21988 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60356 Hypothetical protein Y46G5A.13 [Caenorhabditis elegans] ref|NP_496718.1| Y46G5A.13 [Caenorhabditis elegans] 0.0
blast CAE63445 Hypothetical protein CBG07904 [Caenorhabditis briggsae] 1.0E-129
blast CAE63445 Hypothetical protein CBG07904 [Caenorhabditis briggsae] 1.0E-127
blast AAK68191 Hypothetical protein C18A3.5a [Caenorhabditis elegans] ref|NP_495121.1| C18A3.5a [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 4.2E-17
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 4.1E-23
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.7E-14
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 8.8E-15
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 4.1E-23
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.7E-14
Sequence
Target Sequence 
>C. ELEGANS:185892_AT
gtggcggtggaagagatcgttatcataatcaatcggaaaagacttatgatgagattttta
atcaagctgctgctgataatacatcggtttatgtcggaaatattgccaatcttggggaag
acgaaattcgccgagcttttgaccgtttcggaccaatcaacgaagtacgaacattcaaaa
ttcagggatacgcatttgtgaaatttgagactaaagaatcagcggcacgggcgattgtac
agatgaataatgcagatattggaggacaaattgttcgatgcagttggggaaaaagtggag
attctggaaagccatccgagcgaggatccggcggtggtggcggcagtggcaactacggtt
acggttacggtaacagcggtggcggcggcggcagcggaggacccggaaattcgcaatttt
cgaattttaatcaacgacccccaccatctggaaatggtggttctggaggcggaagtggag
gccaaaataatcaatattggcagtactattcgcaatactacaataatccacatttgatgc
aacaatggaataattattggcaaaaggatggaccaccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCGGTGGAAGAGATCGTTATCA 16 491 698 Antisense
GAGATTTTTAATCAAGCTGCTGCTG 452 397 748 Antisense
GCTGCTGCTGATAATACATCGGTTT 359 297 763 Antisense
GACGAAATTCGCCGAGCTTTTGACC 633 379 817 Antisense
GCTTTTGACCGTTTCGGACCAATCA 625 301 832 Antisense
TCAGCGGCACGGGCGATTGTACAGA 411 625 916 Antisense
GGAAAGCCATCCGAGCGAGGATCCG 634 525 1003 Antisense
GCAGTGGCAACTACGGTTACGGTTA 413 309 1040 Antisense
GGCAGCGGAGGACCCGGAAATTCGC 619 521 1087 Antisense
GGAAATGGTGGTTCTGGAGGCGGAA 621 527 1147 Antisense
TTGGCAAAAGGATGGACCACCACCA 146 605 1254 Antisense
Sequence Source Affymetrix Proprietary Database