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[185891_at]

Description Y102E9.3 /REP_DB=WormBase Gene ID /WP=CE07575 /TR=Q23234 /GB=AAA93428.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 14.1
(-3)
A 		55.6
(2.9)
A 		56.3
(3)
A 		49.1
(2)
A 		42
B 12.8
(-3)
A 		75.7
(3)
A 		28.2
(-1.5)
A 		57
(1.2)
A 		63
C 34.7
(-0.1)
A 		8.4
(-3)
A 		47.8
(1.4)
A 		61.9
(3)
A 		54
avr 20.5
(-3) 		46.6
(1.4) 		44.1
(1) 		56
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 10.6
(-2.8)
A 		36.6
(1.7)
A 		43.8
(3)
A 		9.4
(-3)
A 		26.2
(-0.1)
A 		44
(3)
A 		35
B 6.2
(-3)
A 		23.7
(-0.9)
A 		55.8
(3)
A 		29.9
(-0.1)
A 		17.5
(-1.6)
A 		17.7
(-1.6)
A 		50
C 24.3
(-0.2)
A 		45.4
(3)
A 		7.6
(-2.7)
A 		40.4
(2.2)
A 		5.7
(-3)
A 		35.2
(1.5)
A 		40
avr 13.7
(-3) 		35.2
(2.9) 		35.7
(3) 		26.6
(0.5) 		16.5
(-2.2) 		32.3
(2.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.1
(-3)
A 		12.1
(1.4)
A 		14.7
(3)
A 		7.2
(-1.7)
A 		10
B 4.1
(-3)
A 		18.7
(3)
A 		6.5
(-2)
A 		12.1
(0.3)
A 		15
C 11.5
(0.8)
A 		2.4
(-3)
A 		16.7
(3)
A 		10.4
(0.4)
A 		14
avr 6.9
(-3) 		11.1
(1.4) 		12.6
(3) 		9.9
(0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-3)
A 		13
(3)
A 		9.5
(1.1)
A 		2.4
(-2.8)
A 		7.9
(0.2)
A 		10.7
(1.7)
A 		11
B 2.1
(-3)
A 		7.9
(0.1)
A 		13.5
(3)
A 		7.9
(0.1)
A 		7.1
(-0.4)
A 		6.6
(-0.6)
A 		11
C 9
(0.6)
A 		13.9
(3)
A 		1.9
(-3)
A 		8.1
(0.1)
A 		1.8
(-3)
A 		11.8
(2)
A 		12
avr 4.4
(-3) 		11.6
(3) 		8.3
(0.3) 		6.1
(-1.6) 		5.6
(-2) 		9.7
(1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8051
Sequence Type Exemplar sequence
Representative Public ID Y102E9.3 NCBI
Target Description Y102E9.3 /REP_DB=WormBase Gene ID /WP=CE07575 /TR=Q23234 /GB=AAA93428.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066077 NCBI Caenorhabditis elegans Y102E9.3 (Y102E9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000008392 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6733925:6734453:-1 11/11 None
Y102E9.3 ENSEMBL cdna:known chromosome:CEL140:III:6733925:6734453:-1 gene:Y102E9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008388 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6733923-6734452(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102E9.3
Entrez Gene 190861 Entrez gene
SwissProt Q23234 EMBL-EBI
WormBase CE07575 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93428 Hypothetical protein Y102E9.3 [Caenorhabditis elegans] ref|NP_498478.1| Y102E9.3 [Caenorhabditis elegans] 3.0E-63
Sequence
Target Sequence 
>C. ELEGANS:185891_AT
atgactgctctaatttctatttctttgcttcttgtaacttttgctggagctgccgaaatg
tgtgcaccagtgactcagcacagcactcctcaatccgatgttccaagtactgtcacaatt
acttttcataagctcgagacttcgacgaccactaaagatgaaatccttaacgcaattagg
actagccacccagatgtgcacgccacaggagagccaatcgataaaaaatcaatcaaggtt
acactaactgctgtttcatgcgtgaccgctatgaaattggcggaagaagtcttgaatgca
ggtacaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACTGCTCTAATTTCTATTTCTT 534 45 13 Antisense
TTCTATTTCTTTGCTTCTTGTAACT 285 691 27 Antisense
TCTTGTAACTTTTGCTGGAGCTGCC 512 609 42 Antisense
TGGAGCTGCCGAAATGTGTGCACCA 205 549 57 Antisense
GTGCACCAGTGACTCAGCACAGCAC 25 481 74 Antisense
ACTCCTCAATCCGATGTTCCAAGTA 78 99 97 Antisense
TAAGCTCGAGACTTCGACGACCACT 544 637 141 Antisense
AATTAGGACTAGCCACCCAGATGTG 553 173 186 Antisense
AGATGTGCACGCCACAGGAGAGCCA 390 67 204 Antisense
CTAACTGCTGTTTCATGCGTGACCG 471 227 256 Antisense
GAAGTCTTGAATGCAGGTACACCAG 360 335 298 Antisense
Sequence Source Affymetrix Proprietary Database