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[185890_at]

Description R09B5.12 /REP_DB=WormBase Gene ID /WP=CE21116 /TR=O44609 /GB=AAD34651.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 39.8
(-3)
A 		66.1
(0.3)
A 		39.6
(-3)
A 		87.1
(3)
A 		48
B 31.7
(-3)
A 		41
(0.2)
A 		33.8
(-2.3)
A 		49.4
(3)
P 		18
C 63.6
(-0.1)
A 		27.6
(-3)
A 		50.5
(-1.2)
A 		103.1
(3)
A 		76
avr 45
(-2.4) 		44.9
(-2.4) 		41.3
(-3) 		79.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 76.1
(3)
A 		69.6
(2.1)
A 		64.9
(1.4)
A 		66.3
(1.6)
A 		33.3
(-3)
A 		68.6
(1.9)
P 		43
B 65.2
(1.1)
M 		28.5
(-3)
A 		82.3
(3)
P 		56.5
(0.1)
P 		63.3
(0.9)
P 		52.3
(-0.3)
A 		54
C 25.3
(-3)
A 		63.8
(0.7)
M 		46
(-1)
A 		59.4
(0.3)
A 		47.1
(-0.9)
A 		87.3
(3)
A 		62
avr 55.5
(-0.9) 		54
(-1.3) 		64.4
(1.6) 		60.7
(0.6) 		47.9
(-3) 		69.4
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.5
(3)
A 		14.4
(2.9)
A 		10.4
(-3)
A 		12.8
(0.5)
A 		4
B 10.1
(2.1)
A 		10.1
(2.1)
A 		7.8
(-3)
A 		10.5
(3)
P 		3
C 21
(3)
A 		7.9
(-3)
A 		17.6
(1.4)
A 		17.4
(1.4)
A 		13
avr 15.2
(3) 		10.8
(-3) 		11.9
(-1.5) 		13.6
(0.8) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 14
(-1.4)
A 		24.8
(3)
A 		14.1
(-1.4)
A 		16.8
(-0.3)
A 		10.1
(-3)
A 		16.7
(-0.3)
P 		15
B 22.7
(1.9)
M 		9.5
(-3)
A 		20
(0.9)
P 		15
(-1)
P 		25.7
(3)
P 		19.5
(0.7)
A 		16
C 9.4
(-3)
A 		19.5
(0.1)
M 		11.7
(-2.3)
A 		11.9
(-2.2)
A 		15.2
(-1.2)
A 		29.2
(3)
A 		20
avr 15.4
(-2.3) 		17.9
(-0.3) 		15.3
(-2.4) 		14.6
(-3) 		17
(-1) 		21.8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15275
Sequence Type Exemplar sequence
Representative Public ID R09B5.12 NCBI
Target Description R09B5.12 /REP_DB=WormBase Gene ID /WP=CE21116 /TR=O44609 /GB=AAD34651.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071019 NCBI Caenorhabditis elegans R09B5.12 (R09B5.12) mRNA, complete cds. 11/11 None
SNAP00000025910 ENSEMBL cdna:SNAP chromosome:CEL140:V:1452934:1456475:1 11/11 None
GENEFINDER00000025924 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1451426:1456475:1 11/11 None
R09B5.12 ENSEMBL cdna:known chromosome:CEL140:V:1454891:1456475:1 gene:R09B5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1454890-1456475(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09B5.12
Entrez Gene 187730 Entrez gene
SwissProt O44609 EMBL-EBI
WormBase CE21116 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MG-U74BV2:113225_AT RIKEN cDNA 3110023E09 gene mm
MG-U74BV2:113226_AT RIKEN cDNA 3110023E09 gene mm
MG-U74CV2:139585_AT RIKEN cDNA 3110023E09 gene mm
MOE430A:1418902_AT RIKEN cDNA 3110023E09 gene mm
MOUSE430A_2:1418902_AT RIKEN cDNA 3110023E09 gene mm
MOUSE430_2:1418902_AT RIKEN cDNA 3110023E09 gene mm
MOE430A:1449267_AT RIKEN cDNA 3110023E09 gene mm
MOUSE430A_2:1449267_AT RIKEN cDNA 3110023E09 gene mm
MOUSE430_2:1449267_AT RIKEN cDNA 3110023E09 gene mm
MU19KSUBB:TC32824_AT RIKEN cDNA 3110023E09 gene, mRNA (cDNA clone MGC:6792 IMAGE:2647540) mm
MU19KSUBB:TC33524_AT RIKEN cDNA 3110023E09 gene, mRNA (cDNA clone MGC:6792 IMAGE:2647540) mm
MU19KSUBC:TC35058_AT RIKEN cDNA 3110023E09 gene, mRNA (cDNA clone MGC:6792 IMAGE:2647540) mm
Protein Similarities
Method ID Description E-Value
blast NP_503420 R09B5.12 [Caenorhabditis elegans] gb|AAD34651.3| Hypothetical protein R09B5.12 [Caenorhabditis elegans] 0.0
blast D88949 protein R09B5.12 [imported] - Caenorhabditis elegans 0.0
blast NP_001024073 Serpentine Receptor, class J family member (srj-23) [Caenorhabditis elegans] gb|AAX22285.1| Serpentine receptor, class j protein 23, isoform b [Caenorhabditis elegans] 1.0E-109
blast CAE62469 Hypothetical protein CBG06565 [Caenorhabditis briggsae] 3.0E-97
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503420.3 1 13-35
R09B5.12 1 13-35
SNAP00000025910 1 52-74
GENEFINDER00000025924 4 20-42,55-77,103-125,146-168
Sequence
Target Sequence 
>C. ELEGANS:185890_AT
gaatgagctcaccgcaattctatccttccctgcagttgttaacgtcattgaagaggaaaa
cggaagcccaaaaagcgtcttctttattagttcagaagaatgcagtggcttagttgctgc
ctattatcatctccagctttggacgtacacggatgcactgaaaggaagccgaaaatatgt
caacgacgagttcatttatcacaatcttcatcactgcggattctcgccaaaactcatgat
tggaatcaacttctatggaattgagctcaatttgaaaggcgcgactacaatcacagctaa
aaggttcttacaagttcttaagggggaggattcggttttcaagttcaatgaggagagcaa
agagcatatgctactttttgaacgcaataaatccacaataattttcccgactcttacaac
tctggagcatcgaatcgcgttagcaaaaaagttcaacgcgagtatctccatctggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGAGCTCACCGCAATTCTATCC 566 331 663 Antisense
TCCTTCCCTGCAGTTGTTAACGTCA 573 589 685 Antisense
GTGGCTTAGTTGCTGCCTATTATCA 414 491 767 Antisense
ATCATCTCCAGCTTTGGACGTACAC 555 29 788 Antisense
TTATCACAATCTTCATCACTGCGGA 600 679 858 Antisense
CACTGCGGATTCTCGCCAAAACTCA 348 197 874 Antisense
GAAAGGCGCGACTACAATCACAGCT 207 361 936 Antisense
AATCCACAATAATTTTCCCGACTCT 653 165 1052 Antisense
TTCCCGACTCTTACAACTCTGGAGC 181 699 1066 Antisense
AACTCTGGAGCATCGAATCGCGTTA 536 139 1080 Antisense
TCAACGCGAGTATCTCCATCTGGGA 551 629 1115 Antisense
Sequence Source Affymetrix Proprietary Database