[Home] | [Total List]

[185888_at]

Description C24A11.1 /REP_DB=WormBase Gene ID /WP=CE20521 /TR=P91090 /GB=AAD32268.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 29      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 49.6
(1.9)
A 		59.7
(3)
A 		5.6
(-3)
A 		8
(-2.7)
A 		54
B 50.1
(3)
A 		43.1
(1.8)
A 		14
(-3)
A 		48.3
(2.7)
A 		36
C 43.2
(-1.2)
A 		27.8
(-2.2)
A 		16.2
(-3)
A 		105.6
(3)
A 		89
avr 47.6
(2.1) 		43.5
(1.5) 		11.9
(-3) 		54
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 44.8
(-1.5)
A 		38.4
(-1.8)
A 		31.7
(-2.1)
A 		9.9
(-3)
A 		127.5
(2)
A 		152.2
(3)
P 		142
B 29.1
(-2)
A 		21.7
(-2.3)
A 		5.4
(-3)
A 		52.1
(-1)
A 		114.7
(1.6)
P 		147.2
(3)
P 		142
C 34
(-3)
A 		33.9
(-3)
A 		36.1
(-2.9)
A 		45.2
(-2.5)
A 		73.7
(-1.1)
A 		161.9
(3)
P 		128
avr 36
(-2.5) 		31.3
(-2.7) 		24.4
(-3) 		35.7
(-2.5) 		105.3
(0.8) 		153.8
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.1
(3)
A 		13
(1.2)
A 		1.5
(-2.9)
A 		1.2
(-3)
A 		17
B 16
(3)
A 		10.7
(0.5)
A 		3.3
(-3)
A 		10.3
(0.3)
A 		13
C 14.3
(1.3)
A 		8
(-1.9)
A 		5.7
(-3)
A 		17.8
(3)
A 		12
avr 16.1
(3) 		10.6
(0.4) 		3.5
(-3) 		9.8
(0) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 8.3
(-2)
A 		13.7
(-1.1)
A 		6.9
(-2.3)
A 		2.5
(-3)
A 		38.5
(3)
A 		37.1
(2.8)
P 		36
B 10.1
(-2)
A 		7.2
(-2.3)
A 		1.3
(-3)
A 		13.8
(-1.6)
A 		46.6
(2.1)
P 		54.9
(3)
P 		54
C 12.6
(-2.5)
A 		10.3
(-2.8)
A 		9.2
(-3)
A 		9.1
(-3)
A 		23.8
(-1)
A 		54.2
(3)
P 		45
avr 10.3
(-2.4) 		10.4
(-2.4) 		5.8
(-3) 		8.5
(-2.6) 		36.3
(1.3) 		48.7
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185888_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.361
Sequence Type Exemplar sequence
Representative Public ID C24A11.1 NCBI
Target Description C24A11.1 /REP_DB=WormBase Gene ID /WP=CE20521 /TR=P91090 /GB=AAD32268.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059184 NCBI Caenorhabditis elegans C24A11.1 (C24A11.1) mRNA, complete cds. 11/11 None
SNAP00000028999 ENSEMBL cdna:SNAP chromosome:CEL140:I:5401862:5402850:1 11/11 None
GENEFINDER00000029005 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5401862:5402850:1 11/11 None
C24A11.1 ENSEMBL cdna:known chromosome:CEL140:I:5401840:5402894:1 gene:C24A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5401861-5402850(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24A11.1
Entrez Gene 172188 Entrez gene
SwissProt P91090 EMBL-EBI
WormBase CE20521 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD32268 Hypothetical protein C24A11.1 [Caenorhabditis elegans] ref|NP_491585.1| C24A11.1 [Caenorhabditis elegans] 1.0E-104
blast D87775 protein C24A11.1 [imported] - Caenorhabditis elegans 4.0E-98
blast CAE67064 Hypothetical protein CBG12472 [Caenorhabditis briggsae] 2.0E-71
Sequence
Target Sequence 
>C. ELEGANS:185888_AT
tgaatccgcaaatcttctggtaccctcatttttgccacgtggcgaagttctcggttggaa
tctgacgtcggtggtgaatccggtgactcgacgtaaagaatacacgtacacggtgtgtgt
gcagactgtcggagcatttcagtgcaccgagcaagcgggcgttgtccttgtgaagtgtga
tggtccatgtggaaacaagttgccaaccaatcatttgattgcattgggaaagtgtgatca
catgttgtgtaaggcctgcttcggcattgtaaagaatccggatggatcctatggatgttc
gaacttctattgctggtcggaaccacgtggaaacttccggaaggaaaaggccaactacaa
taaggtcatcaacaagcagatctgccgtgccagaaagttcaaacaagacggggaagattt
gcaagcatgcagcaaatcgaatcttcccaagactcctgctgacctatcggaccgtgagat
gaactctgcgaaatcctcggaatcggatacgtcgtcttctgatggttcttcctaccaatc
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATCCGCAAATCTTCTGGTACCC 662 575 45 Antisense
CCACGTGGCGAAGTTCTCGGTTGGA 115 275 79 Antisense
TGGTGAATCCGGTGACTCGACGTAA 37 551 116 Antisense
TGCACCGAGCAAGCGGGCGTTGTCC 182 385 187 Antisense
GTGTAAGGCCTGCTTCGGCATTGTA 36 487 291 Antisense
GATGTTCGAACTTCTATTGCTGGTC 602 409 338 Antisense
GCATGCAGCAAATCGAATCTTCCCA 20 311 469 Antisense
CTGCTGACCTATCGGACCGTGAGAT 360 237 500 Antisense
GAACTCTGCGAAATCCTCGGAATCG 472 349 525 Antisense
GGAATCGGATACGTCGTCTTCTGAT 246 533 543 Antisense
TCTGATGGTTCTTCCTACCAATCCA 112 609 562 Antisense
Sequence Source Affymetrix Proprietary Database