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[185887_at]

Description Y81B9A.1 /REP_DB=WormBase Gene ID /WP=CE23116 /TR=Q9N4P6 /GB=AAF60881.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 72.5
(-3)
A 		123.9
(0.1)
A 		100.4
(-1.3)
A 		172.3
(3)
A 		100
B 81.9
(-1.6)
A 		108.5
(1.1)
A 		127.4
(3)
A 		68.1
(-3)
A 		59
C 75.2
(-3)
A 		137.8
(3)
M 		100.4
(-0.6)
A 		136.9
(2.9)
A 		63
avr 76.5
(-3) 		123.4
(2.7) 		109.4
(1) 		125.8
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 92.1
(3)
A 		20.7
(-3)
A 		69.2
(1.1)
P 		68.9
(1.1)
A 		58.4
(0.2)
A 		62.1
(0.5)
A 		71
B 40.8
(-3)
A 		84.7
(1.3)
A 		102.2
(3)
M 		77.5
(0.6)
A 		70.1
(-0.1)
P 		61.2
(-1)
P 		61
C 58.7
(1.9)
A 		58.9
(2)
A 		53.7
(1.4)
A 		16.5
(-3)
A 		37.4
(-0.6)
A 		67.8
(3)
P 		51
avr 63.9
(-0.2) 		54.8
(-2.9) 		75
(3) 		54.3
(-3) 		55.3
(-2.7) 		63.7
(-0.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.4
(1.2)
A 		26.9
(3)
A 		26.2
(0.5)
A 		25.2
(-3)
A 		2
B 26.1
(1.6)
A 		26.8
(1.9)
A 		29.5
(3)
A 		14.5
(-3)
A 		15
C 24.9
(-2.3)
A 		39.6
(3)
M 		35
(1.3)
A 		23.1
(-3)
A 		17
avr 25.8
(-0.1) 		31.1
(3) 		30.2
(2.5) 		20.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 17
(2.6)
A 		7.4
(-3)
A 		15.1
(1.5)
P 		17.5
(2.9)
A 		17.6
(3)
A 		15.1
(1.5)
A 		10
B 14.2
(-3)
A 		28.2
(2.9)
A 		24.8
(1.4)
M 		20.5
(-0.4)
A 		28.5
(3)
P 		22.8
(0.6)
P 		14
C 21.8
(2.7)
A 		18
(1.5)
A 		13.7
(0.2)
A 		3.3
(-3)
A 		12.1
(-0.3)
A 		22.7
(3)
P 		19
avr 17.7
(0.7) 		17.9
(0.8) 		17.9
(0.8) 		13.8
(-3) 		19.4
(2.3) 		20.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16378
Sequence Type Exemplar sequence
Representative Public ID Y81B9A.1 NCBI
Target Description Y81B9A.1 /REP_DB=WormBase Gene ID /WP=CE23116 /TR=Q9N4P6 /GB=AAF60881.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077150 NCBI Caenorhabditis elegans Y81B9A.1 (Y81B9A.1) mRNA, complete cds. 11/11 None
SNAP00000033315 ENSEMBL cdna:SNAP chromosome:CEL140:X:9192167:9194658:1 11/11 None
GENEFINDER00000033321 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9192167:9194266:1 11/11 None
Y81B9A.1 ENSEMBL cdna:known chromosome:CEL140:X:9192377:9194315:1 gene:Y81B9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y81B9A.1
Entrez Gene 190744 Entrez gene
SwissProt Q9N4P6 EMBL-EBI
WormBase CE23116 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60881 Hypothetical protein Y81B9A.1 [Caenorhabditis elegans] ref|NP_509551.1| Y81B9A.1 [Caenorhabditis elegans] 0.0
blast AAK18923 Hypothetical protein EGAP798.1 [Caenorhabditis elegans] ref|NP_505286.1| EGAP798.1 [Caenorhabditis elegans] 6.0E-41
blast AAK18923 Hypothetical protein EGAP798.1 [Caenorhabditis elegans] ref|NP_505286.1| EGAP798.1 [Caenorhabditis elegans] 7.0E-41
blast CAB04993 Hypothetical protein ZK228.1 [Caenorhabditis elegans] ref|NP_507612.1| ZK228.1 [Caenorhabditis elegans] 3.0E-36
blast CAB04993 Hypothetical protein ZK228.1 [Caenorhabditis elegans] ref|NP_507612.1| ZK228.1 [Caenorhabditis elegans] 4.0E-36
blast AAK18923 Hypothetical protein EGAP798.1 [Caenorhabditis elegans] ref|NP_505286.1| EGAP798.1 [Caenorhabditis elegans] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:185887_AT
tcctaaccctcactggtcaagcagatcaccgctacggagcttatgacaacatcagtcact
tccaaatggctcagtacatcgaagatctcaagtcgtacggaaagagactacgaggcgaag
aatggactctctgcaaattggaatacaattccatcgagaacatcagaagcccgctacgtc
cggaaggatccagattcatctatcttccaacggtcactctttggtgtatcgcctcagtgc
aaggagcaatgaaggccgtattggcaaaacgcgacccagctcaacatgtcaatcctatcg
acaatgtagttggactcgactcaaagccatggttcaacattttgctaccatcatttgccg
atgacgaaaccaacccagcagcacagtttgctcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTAACCCTCACTGGTCAAGCAGA 64 585 1220 Antisense
GCAGATCACCGCTACGGAGCTTATG 512 309 1240 Antisense
ACATCAGTCACTTCCAAATGGCTCA 638 105 1268 Antisense
ATTCATCTATCTTCCAACGGTCACT 697 9 1413 Antisense
AACGGTCACTCTTTGGTGTATCGCC 494 143 1428 Antisense
GGTGTATCGCCTCAGTGCAAGGAGC 284 499 1442 Antisense
GGCCGTATTGGCAAAACGCGACCCA 695 541 1473 Antisense
CCAGCTCAACATGTCAATCCTATCG 204 273 1495 Antisense
GACTCGACTCAAAGCCATGGTTCAA 10 375 1532 Antisense
ACATTTTGCTACCATCATTTGCCGA 209 105 1556 Antisense
AACCCAGCAGCACAGTTTGCTCGGG 496 145 1591 Antisense
Sequence Source Affymetrix Proprietary Database