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[185886_at]

Description F37C12.3 /REP_DB=WormBase Gene ID /WP=CE00740 /TR=Q20122 /GB=AAC48302.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 26      6grp_total > 62      4grp_total > 50      6grp_highest_sub > 03      6grp_cgc > 73      6grp_high1_sub > 03      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4586
1 2 3 4 range
A 4045.6
(-1.9)
P 		7619.8
(3)
P 		6695.4
(1.7)
P 		3242.8
(-3)
P 		4377
B 3971.6
(-1.4)
P 		6306.2
(2.7)
P 		6451.1
(3)
P 		3034
(-3)
P 		3417
C 4533
(-0.7)
P 		6124.5
(3)
P 		6002.8
(2.7)
P 		3548
(-3)
P 		2577
avr 4183.4
(-1.4) 		6683.5
(3) 		6383.1
(2.5) 		3274.9
(-3) 		3409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4870
1 2 3 4 5 6 range
A 5193.9
(-0.7)
P 		4978
(-1)
P 		8214
(3)
P 		6422.2
(0.8)
P 		4908.3
(-1.1)
P 		3344
(-3)
P 		4870
B 3886
(-2.7)
P 		6777.4
(1.5)
P 		7781.1
(3)
P 		6848.9
(1.6)
P 		5087.5
(-1)
P 		3703.7
(-3)
P 		4077
C 3443.4
(-3)
P 		8045
(3)
P 		6548
(1)
P 		6882.8
(1.5)
P 		4667.8
(-1.4)
P 		3977.6
(-2.3)
P 		4602
avr 4174.4
(-2.2) 		6600.1
(1.6) 		7514.4
(3) 		6718
(1.8) 		4887.9
(-1.1) 		3675.1
(-3) 		3839
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1618
1 2 3 4 range
A 1473
(1.7)
P 		1654
(2.5)
P 		1750.3
(3)
P 		474.7
(-3)
P 		1276
B 1266.5
(1.1)
P 		1557.5
(3)
P 		1494.9
(2.6)
P 		646.5
(-3)
P 		911
C 1500.5
(0.6)
P 		1760.8
(1.7)
P 		2092.2
(3)
P 		598.2
(-3)
P 		1494
avr 1413.3
(1.2) 		1657.4
(2.4) 		1779.1
(3) 		573.1
(-3) 		1206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1641
1 2 3 4 5 6 range
A 957.4
(-2.1)
P 		1770.4
(2.9)
P 		1788.8
(3)
P 		1628.8
(2)
P 		1481.1
(1.1)
P 		814.2
(-3)
P 		975
B 1352.2
(-3)
P 		2255.9
(3)
P 		1889.5
(0.6)
P 		1814
(0.1)
P 		2067
(1.7)
P 		1381.1
(-2.8)
P 		904
C 1276.3
(-3)
P 		2454.8
(3)
P 		1666.6
(-1)
P 		1384.1
(-2.5)
P 		1510.4
(-1.8)
P 		1331.5
(-2.7)
P 		1179
avr 1195.3
(-2.9) 		2160.4
(3) 		1781.6
(0.7) 		1609
(-0.4) 		1686.2
(0.1) 		1175.6
(-3) 		985
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7192
Sequence Type Exemplar sequence
Representative Public ID F37C12.3 NCBI
Target Description F37C12.3 /REP_DB=WormBase Gene ID /WP=CE00740 /TR=Q20122 /GB=AAC48302.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066173(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066173 NCBI Caenorhabditis elegans F37C12.3 (F37C12.3) mRNA, complete cds. 11/11 None
SNAP00000030590 ENSEMBL cdna:SNAP chromosome:CEL140:III:7180686:7181703:1 9/11 None
GENEFINDER00000030603 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7180686:7181703:1 11/11 None
F37C12.3.1 ENSEMBL cdna:known chromosome:CEL140:III:7180654:7181832:1 gene:F37C12.3 11/11 None
F37C12.3.2 ENSEMBL cdna:known chromosome:CEL140:III:7180676:7181832:1 gene:F37C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7180650-7181701(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C12.3
Entrez Gene 176008 Entrez gene
SwissProt Q20122 EMBL-EBI
WormBase CE33082 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
36 acyl carrier activity inferred from electronic annotation QuickGO AmiGO
48037 cofactor binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48302 Hypothetical protein F37C12.3 [Caenorhabditis elegans] ref|NP_498574.2| F37C12.3 [Caenorhabditis elegans] 5.0E-59
blast AAC48302 Hypothetical protein F37C12.3 [Caenorhabditis elegans] ref|NP_498574.2| F37C12.3 [Caenorhabditis elegans] 8.0E-56
blast CAE63803 Hypothetical protein CBG08349 [Caenorhabditis briggsae] 4.0E-55
blast CAE63803 Hypothetical protein CBG08349 [Caenorhabditis briggsae] 7.0E-52
blast AAC48302 Hypothetical protein F37C12.3 [Caenorhabditis elegans] ref|NP_498574.2| F37C12.3 [Caenorhabditis elegans] 5.0E-38
blast CAE63803 Hypothetical protein CBG08349 [Caenorhabditis briggsae] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR006163 EMBL-EBI Phosphopantetheine-binding domain 1.2E-10
Pfam IPR006163 EMBL-EBI Phosphopantetheine-binding domain 1.2E-10
Pfam IPR006163 EMBL-EBI Phosphopantetheine-binding domain 1.2E-10
Sequence
Target Sequence 
>C. ELEGANS:185886_AT
gttggacgcgtcgttttcagaactgcctcggtggtagttcaacggagatctgtgtcagct
tcggtgccgcaaatggtcaagctcgtggctccatctgtaaatttcattcaaactagggga
agcaaaattgaagtcttcggaccattcgaccccccaaagcaactcacattcaaacaggtt
gaagatcgtgttttgaaagcagttcgctcatgggatcgtttcccagcagacaaggagtca
cttttgaagcttgatgctgatttgagcaaagattttggatttgattctctggatcaggtc
gaaattgtgatggcactggaagacgaattcggattcgagatcccacttcaggattccgat
aagttcaagaccattcgcgatgcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGACGCGTCGTTTTCAGAACTG 498 435 61 Antisense
AACTGCCTCGGTGGTAGTTCAACGG 553 141 81 Antisense
AACGGAGATCTGTGTCAGCTTCGGT 357 143 101 Antisense
CGGTGCCGCAAATGGTCAAGCTCGT 95 245 122 Antisense
AAGCTCGTGGCTCCATCTGTAAATT 255 151 139 Antisense
ATTGAAGTCTTCGGACCATTCGACC 29 3 187 Antisense
CCCCCAAAGCAACTCACATTCAAAC 18 261 211 Antisense
AGCAGTTCGCTCATGGGATCGTTTC 223 77 258 Antisense
GGATCGTTTCCCAGCAGACAAGGAG 587 511 273 Antisense
TCGAGATCCCACTTCAGGATTCCGA 165 601 395 Antisense
GTTCAAGACCATTCGCGATGCATTC 184 445 423 Antisense
Sequence Source Affymetrix Proprietary Database