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[185885_at]

Description C15B12.6 /REP_DB=WormBase Gene ID /WP=CE02488 /TR=Q18008 /GB=AAK39162.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 42      6grp_total > 31      4grp_total > 45      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 101.7
(3)
P 		76.3
(0.8)
P 		33.4
(-3)
A 		41.3
(-2.3)
A 		68
B 78.6
(3)
P 		66.6
(1)
P 		42
(-3)
A 		46.1
(-2.3)
P 		37
C 108
(3)
P 		88.3
(0.8)
P 		54.2
(-3)
P 		68.6
(-1.4)
A 		54
avr 96.1
(3) 		77.1
(0.8) 		43.2
(-3) 		52
(-2) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 90.9
(0.6)
P 		114.3
(2.2)
P 		89.5
(0.5)
P 		126.3
(3)
P 		62.4
(-1.4)
P 		38.3
(-3)
P 		88
B 61.3
(-0.7)
P 		92.2
(2)
P 		104
(3)
P 		34.2
(-3)
A 		94.2
(2.2)
P 		55.4
(-1.2)
P 		70
C 105.1
(2)
P 		91.8
(0.9)
P 		59.5
(-2)
P 		115.7
(3)
P 		48.9
(-3)
P 		55.2
(-2.4)
P 		67
avr 85.8
(1.4) 		99.4
(3) 		84.3
(1.2) 		92.1
(2.1) 		68.5
(-0.7) 		49.6
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 37
(3)
P 		16.6
(-0.9)
P 		8.7
(-2.5)
A 		6
(-3)
A 		31
B 25.1
(3)
P 		16.4
(-0.4)
P 		9.7
(-3)
A 		9.8
(-3)
P 		15
C 35.7
(3)
P 		25.4
(0.4)
P 		18.9
(-1.2)
P 		11.6
(-3)
A 		24
avr 32.6
(3) 		19.5
(-0.3) 		12.4
(-2.2) 		9.1
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 16.8
(-1.6)
P 		40.6
(3)
P 		19.5
(-1)
P 		32
(1.4)
P 		18.8
(-1.2)
P 		9.3
(-3)
P 		31
B 21.3
(-0.5)
P 		30.7
(1.4)
P 		25.3
(0.3)
P 		9.1
(-3)
A 		38.3
(3)
P 		20.7
(-0.6)
P 		29
C 38.9
(3)
P 		28
(0.2)
P 		15.2
(-3)
P 		23.3
(-0.9)
P 		15.8
(-2.8)
P 		18.5
(-2.2)
P 		24
avr 25.7
(0.4) 		33.1
(3) 		20
(-1.7) 		21.5
(-1.1) 		24.3
(-0.1) 		16.2
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16895
Sequence Type Exemplar sequence
Representative Public ID C15B12.6 NCBI
Target Description C15B12.6 /REP_DB=WormBase Gene ID /WP=CE02488 /TR=Q18008 /GB=AAK39162.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076693(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076693 NCBI Caenorhabditis elegans C15B12.6 (C15B12.6) mRNA, complete cds. 11/11 None
GENEFINDER00000029089 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6493972:6499791:-1 11/11 None
SNAP00000029086 ENSEMBL cdna:SNAP chromosome:CEL140:X:6498790:6499791:-1 10/11 None
C15B12.6 ENSEMBL cdna:known chromosome:CEL140:X:6497875:6499791:-1 gene:C15B12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6498540-6499791(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15B12.6
Entrez Gene 182629 Entrez gene
SwissProt Q18008 EMBL-EBI
WormBase CE37610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39162 Hypothetical protein C15B12.6 [Caenorhabditis elegans] ref|NP_509094.2| C15B12.6 [Caenorhabditis elegans] 1.0E-176
blast AAK39162 Hypothetical protein C15B12.6 [Caenorhabditis elegans] ref|NP_509094.2| C15B12.6 [Caenorhabditis elegans] 1.0E-174
blast AAK39162 Hypothetical protein C15B12.6 [Caenorhabditis elegans] ref|NP_509094.2| C15B12.6 [Caenorhabditis elegans] 1.0E-100
blast CAE61269 Hypothetical protein CBG05082 [Caenorhabditis briggsae] 9.0E-56
blast CAE61269 Hypothetical protein CBG05082 [Caenorhabditis briggsae] 1.0E-55
blast CAE61269 Hypothetical protein CBG05082 [Caenorhabditis briggsae] 2.0E-30
Sequence
Target Sequence 
>C. ELEGANS:185885_AT
ggaggttgatgtgttatccgacaaatgcgttgaagatattctagaagacgttcacataga
tgatccaattttagtatctgatgttcgaattaccctacctgcaaacattcgaatcaaaaa
cttcaagaaagaaatacgagatttgattttagcaaatctagatgtcccaacaacggtttc
ggccggatcatggcagattgtttcaagtttcttgcgcggcattgaatactcggagatagg
aggaagggaacgaaatagcaagctatcgtggaagccatttgaagatatgcacgctcaaat
acttgtaaatgctctagcatatgctcaacgagtcgatattttagtgaagcttaaatcgta
tatagattccaacagttatctgaaaaatgaaatattattgttgcactatgaaactacgtc
caaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTTGATGTGTTATCCGACAAA 316 515 72 Antisense
ATCTGATGTTCGAATTACCCTACCT 503 33 147 Antisense
TACCCTACCTGCAAACATTCGAATC 588 649 162 Antisense
CTAGATGTCCCAACAACGGTTTCGG 225 1 229 Antisense
GGTTTCGGCCGGATCATGGCAGATT 522 505 246 Antisense
GATTGTTTCAAGTTTCTTGCGCGGC 192 435 267 Antisense
CTTGCGCGGCATTGAATACTCGGAG 204 219 282 Antisense
GCAAGCTATCGTGGAAGCCATTTGA 232 321 329 Antisense
AGATATGCACGCTCAAATACTTGTA 707 65 354 Antisense
TGCTCTAGCATATGCTCAACGAGTC 642 579 381 Antisense
GTTGCACTATGAAACTACGTCCAAA 250 437 471 Antisense
Sequence Source Affymetrix Proprietary Database